View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12414_high_2 (Length: 477)
Name: NF12414_high_2
Description: NF12414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12414_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 19 - 460
Target Start/End: Complemental strand, 49351890 - 49351448
Alignment:
| Q |
19 |
ctgccttggtgtgcctggagatccaactcaccttaatttttaataaaaaatacaaaatactttaaaacttctagaatgatattgtttgtccttgttatta |
118 |
Q |
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| T |
49351890 |
ctgccttggtgtgcctggagatccaactcaccttaatttttaataaaaaatacaaaatactttaaaacttctagaatgatattgtttgtccttgttatta |
49351791 |
T |
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| Q |
119 |
atcttatttgaaatcatgatggaaatgaaatgtaatgaagccttatttttcagggacggtgtaaacttcttggaaaaccactttatgtgcttgtggagcc |
218 |
Q |
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| T |
49351790 |
atcttatttgaaatcatgatggaaatgaaatgtaatgaagccttctttttcagggacggtgtaaacttcttggaaaaccactttatgtgcttgtggagcc |
49351691 |
T |
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| Q |
219 |
acgtcaagtagatgaatgcttttgaggttcgccactatttcctgaaatgggaattctaatagtac-tttatttccttactttaaatgatcattttgtggt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
49351690 |
acgtcaagtagatgaatgcttttgaggttcgccactatttcctgaaatgggaattctaatagtacttttttttccttactttaaatgatcattttgtggt |
49351591 |
T |
|
| Q |
318 |
gtgactctattcattttactgcatgatctcataatgtcaattgccttttattctaacgtggtaactagcctaacaattagctagtgcgtccaaaaacaaa |
417 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49351590 |
gtgactctattcattttgctgcatgatctcataatgtcaattgccttttattctaacgtggtaactagcctaacaattagctagtgcgtccaaaaacaaa |
49351491 |
T |
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| Q |
418 |
agaaacaaataaagacacgtttctaggttgattgtgtcttttg |
460 |
Q |
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| T |
49351490 |
agaaacaaataaagacacgtttctaggttgattgtgtcttttg |
49351448 |
T |
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