View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12414_low_1 (Length: 744)
Name: NF12414_low_1
Description: NF12414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12414_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 675; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 675; E-Value: 0
Query Start/End: Original strand, 18 - 739
Target Start/End: Complemental strand, 31761731 - 31761005
Alignment:
| Q |
18 |
tagggacgcgagaaatggcaaacctgtcgcagtttgaaacagatgtgtagtgtagtataactaaaatctatatctacttcgtacaatgaaatcaccaata |
117 |
Q |
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| T |
31761731 |
tagggacgcgagaaatggcaaacctgccgcagtttgaaacagatgtgtagtgtagtataactaaaatctatatctacttcgtacaatgaaatcaccaata |
31761632 |
T |
|
| Q |
118 |
gtctaatttggtatacaacatatcaatttattatgtgtttcattcttgttaatgattgagtacaaaatatgaatcattgtgtgttactgttttggcttcg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31761631 |
gtctaatttggtatacaacatatcaatttattatgtgtttcattcttgttaatgattgagtacaaaatatgaatcattgtgtgttactgttttggcttcg |
31761532 |
T |
|
| Q |
218 |
aatacctgagtgaacaattttctgttctagtttaattacaaatgtcccgttcttaatgtaaattctgatctcacgtatgcatttgaaggtagtgcttgac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31761531 |
aatacctgagtgaacaattttctgttctagtttaattacaaatgtcccgttcttaatgtaaattctgatctcacgtatgcatttgaaggtagtgcttgac |
31761432 |
T |
|
| Q |
318 |
ttggatgaaacactgatatgtgcatatgagacatcaagtgtgtcagatgagctaaaaactcaagcaactcaaggcggtttaaattggtttgagctcgaat |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31761431 |
ttggatgaaacactgatatgtgcatatgagacatcaagtgtgtcagatgagctaaaaactcaagcaactcaagctggtttaaattggtttgagctcgaat |
31761332 |
T |
|
| Q |
418 |
gtgtattcgataacaaggtttgttacttgatcgcttgt-----attccttgtcttctgataaagtattaaatcttaacatgtgaatgttgtgtcttcaag |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31761331 |
gtgtattcgataacaaggtttgttacttgatcgcttgtatctgattccttgtcttctgataaagtattaaatcttaacatgtgaatgttgtgtcttcaag |
31761232 |
T |
|
| Q |
513 |
gaagcagatggagaaccaataatcaattatgttaccgtctttgaacgccccgggctgaaagaattcttaaagcaacttagtgaatttgctgacctggttc |
612 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31761231 |
gaagcagatggagaaccaataatcaattatgttaccgtctttgaacgccccgggctgaaagaattcttaaagcaacttagcgaatttgctgacctggttc |
31761132 |
T |
|
| Q |
613 |
tgtttactgctggtgttgaaggtttgatctaaaatactatgctcttcttatgctgcatttttgtatcacggaagcgcttttctatatatttaatgatatt |
712 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||| |
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| T |
31761131 |
tgtttactgctggtgttgaaggtttgatctaaaatactatgctcttcttatgctgcatctctgtatcacggaagcgctttcctatatatttaatgatatt |
31761032 |
T |
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| Q |
713 |
attctctaaattctcacaggttctgct |
739 |
Q |
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|||||||||||||||||||||| |||| |
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| T |
31761031 |
attctctaaattctcacaggttatgct |
31761005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 507 - 637
Target Start/End: Complemental strand, 35574500 - 35574370
Alignment:
| Q |
507 |
ttcaaggaagcagatggagaaccaataatcaattatgttaccgtctttgaacgccccgggctgaaagaattcttaaagcaacttagtgaatttgctgacc |
606 |
Q |
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|||||||||| ||| ||| ||||| ||| ||||||||||| ||||||||||| || ||| |||| |||||||||| | ||||||||||||||||||||| |
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| T |
35574500 |
ttcaaggaaggagaaggaagaccaaaaattaattatgttacagtctttgaacggcctgggttgaaggaattcttaacgaaacttagtgaatttgctgacc |
35574401 |
T |
|
| Q |
607 |
tggttctgtttactgctggtgttgaaggttt |
637 |
Q |
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|||| ||||||||||| ||| |||||||||| |
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| T |
35574400 |
tggtgctgtttactgcgggtcttgaaggttt |
35574370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 283 - 356
Target Start/End: Complemental strand, 35574721 - 35574648
Alignment:
| Q |
283 |
tgatctcacgtatgcatttgaaggtagtgcttgacttggatgaaacactgatatgtgcatatgagacatcaagt |
356 |
Q |
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|||||||| ||||| | ||| ||||||| |||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
35574721 |
tgatctcatgtatgaacttgtaggtagtacttgacttggatgaaacacttgtatgtgcatacgagacatcaagt |
35574648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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