View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12414_low_3 (Length: 279)

Name: NF12414_low_3
Description: NF12414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12414_low_3
NF12414_low_3
[»] chr4 (3 HSPs)
chr4 (123-263)||(27436305-27436445)
chr4 (123-263)||(27944797-27944937)
chr4 (123-263)||(27549791-27549931)


Alignment Details
Target: chr4 (Bit Score: 121; Significance: 5e-62; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 123 - 263
Target Start/End: Complemental strand, 27436445 - 27436305
Alignment:
Q  123 cctgattcctaaccggggtgaccgctcctttttctctccaatcgaaatcatgaggaaggttctctgtcgaaagaataggtgcagcttttgcatgtctcgg 222  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27436445 cctgattcctaaccggggtaaccgctcctttttctctccaatcaaaatcacgaggaaggttctcggtcgaaagaataggtgcagcttttgcatgtctcgg 27436346  T
Q  223 taaccctactccttttaatcccaagatgctattatgaaact 263  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  27436345 taaccctactccttttaatcccaagatgctattacgaaact 27436305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 123 - 263
Target Start/End: Complemental strand, 27944937 - 27944797
Alignment:
Q  123 cctgattcctaaccggggtgaccgctcctttttctctccaatcgaaatcatgaggaaggttctctgtcgaaagaataggtgcagcttttgcatgtctcgg 222  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||| | |||||||||||||||||||||||||||||||||    
T  27944937 cctgattcctaaccggggtaaccgctcctttttctctccaatcaaaatcacgaggaaggttctcggacgaaagaataggtgcagcttttgcatgtctcgg 27944838  T
Q  223 taaccctactccttttaatcccaagatgctattatgaaact 263  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  27944837 taaccctactccttttaatcccaagatgctattacgaaact 27944797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 123 - 263
Target Start/End: Original strand, 27549791 - 27549931
Alignment:
Q  123 cctgattcctaaccggggtgaccgctcctttttctctccaatcgaaatcatgaggaaggttctctgtcgaaagaataggtgcagcttttgcatgtctcgg 222  Q
    ||||||||||||| ||||| ||||||||||||||||||||||| |||||| ||||||||||||| | |||||||||||||||||||||||||||||||||    
T  27549791 cctgattcctaacaggggtaaccgctcctttttctctccaatcaaaatcacgaggaaggttctcggacgaaagaataggtgcagcttttgcatgtctcgg 27549890  T
Q  223 taaccctactccttttaatcccaagatgctattatgaaact 263  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  27549891 taaccctactccttttaatcccaagatgctattacgaaact 27549931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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