View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12414_low_4 (Length: 230)
Name: NF12414_low_4
Description: NF12414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12414_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 9 - 225
Target Start/End: Complemental strand, 33756530 - 33756307
Alignment:
| Q |
9 |
aacctgtgaaaagaaactttatttctgtctgctcgtccaaacaacataaaatatctccccaatttctctct-----------cctctatttctttgatca |
97 |
Q |
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| T |
33756530 |
aaccagtgaaaagaaactttatttctgtctgctcgtccaaacaacataaaatatctccccaatttctctcttatttctctctcctctatttctttgatca |
33756431 |
T |
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| Q |
98 |
tccaaatagagcataacgttttcgccaatcacaacaacacagtctctcctcaaccctaaaaccctcccgcgattgagcgagcgattcacatcaacaacac |
197 |
Q |
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|||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33756430 |
tccaaatagaacataacgttttcgccaatcacagcaacacagtctctcctcaaccctaaaaccctcccgcgattga----gcgattcacatcaacaacac |
33756335 |
T |
|
| Q |
198 |
agctttcttcatctctttccacaggttc |
225 |
Q |
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||||||||||||||||| |||||||||| |
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| T |
33756334 |
agctttcttcatctcttcccacaggttc |
33756307 |
T |
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