View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12415_high_4 (Length: 287)
Name: NF12415_high_4
Description: NF12415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12415_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 14 - 268
Target Start/End: Complemental strand, 43855191 - 43854936
Alignment:
| Q |
14 |
agaatgggaaggttatgcccacaaacattgtgaatgctgaatcaaaaacattgtgaatacaaataacaattttgaatttcattnnnnnnnn-caagtaga |
112 |
Q |
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| T |
43855191 |
agaatgggaaggttatgcccacaaacattgtgaatgctgaatcaaaaacattgtgaatacaaatagcaattttgaatttcattaaaaaaaaacaagtaga |
43855092 |
T |
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| Q |
113 |
agaaaaagacctcgaaatcatattaatggagtcatgcagtcatgaaatctccatcaaattgattgtaaaatacaattcataatatgagtcaactattcat |
212 |
Q |
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| T |
43855091 |
agaaaaagacctcgaaatcatattaatggagtcaagcagtcatgaaatctccatcaaattgattgtaaaatacaattcataatatgagtcaactattcat |
43854992 |
T |
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| Q |
213 |
catagaaaagatttgcgatttcacaaagataaaatatccaattttagaaaggtgct |
268 |
Q |
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| T |
43854991 |
catagaaaagatttgcgatttcacaaagataaaatatccaattttagaaaggtgct |
43854936 |
T |
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