View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12415_low_1 (Length: 495)

Name: NF12415_low_1
Description: NF12415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12415_low_1
NF12415_low_1
[»] chr2 (5 HSPs)
chr2 (19-422)||(5821144-5821547)
chr2 (31-94)||(5764232-5764295)
chr2 (166-239)||(5819567-5819639)
chr2 (31-94)||(5833533-5833596)
chr2 (406-436)||(5821563-5821593)
[»] chr4 (3 HSPs)
chr4 (30-86)||(51198046-51198102)
chr4 (28-94)||(51211570-51211636)
chr4 (30-86)||(51155531-51155587)
[»] chr6 (1 HSPs)
chr6 (31-94)||(29331236-29331299)
[»] chr1 (1 HSPs)
chr1 (43-86)||(38527192-38527235)
[»] chr3 (1 HSPs)
chr3 (34-94)||(49738538-49738598)


Alignment Details
Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 19 - 422
Target Start/End: Original strand, 5821144 - 5821547
Alignment:
Q  19 gaagcaaccagtggagaggttattggaagaatgtctggtgataccattctcattcaagatgccatgggagaaaaggcaagtttctttcttgtatgacaag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5821144 gaagcaaccagtggagaggttattggaagaatgtctggtgataccattctcattcaagatgccatgggagaaaaggcaagtttctttcttgtatgacaag 5821243  T
Q  119 ttaacaccatgcatgcatgtatcatgttcgtcaaaggatttacatctatgatattttattattccaatggcactatcaaccaatgtttttaaaaaccgaa 218  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5821244 ttaacaccatgcatgcatgtatcatgttcgtctaaggatttacatctatgatattttattattccaatggcactatcaaccaatgtttttaaaaaccgaa 5821343  T
Q  219 cctaactagacggttcattatatctacaatttgatccttgttcaaacagtttaaagtagttgaacttaaaacatctcagtttcaattttttgaaacaatg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5821344 cctaactagacggttcattatatctacaatttgatccttgttcaaacggtttaaagtagttgaacttaaaacatctcagtttcaattttttgaaacaatg 5821443  T
Q  319 gtatcaagtgtcaactactaaaaagatgaatcgcaatattaaagagatgacaaaatgtcactttattttaatttgtcgctaagtgttagaaatataccta 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5821444 gtatcaagtgtcaactactaaaaagatgaatcgcaatattaaagagatgacaaaatgtcactttattttaatttgtcgctaagtgttagaaatataccta 5821543  T
Q  419 aatt 422  Q
    ||||    
T  5821544 aatt 5821547  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 5764232 - 5764295
Alignment:
Q  31 ggagaggttattggaagaatgtctggtgataccattctcattcaagatgccatgggagaaaagg 94  Q
    ||||| || ||||| |||||||||||||| || |||||||||||||||||||||||||||||||    
T  5764232 ggagaagtaattggtagaatgtctggtgacacaattctcattcaagatgccatgggagaaaagg 5764295  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 166 - 239
Target Start/End: Original strand, 5819567 - 5819639
Alignment:
Q  166 atgatattttattattccaatggcactatcaaccaatgtttttaaaaaccgaacctaactagacggttcattat 239  Q
    ||||| ||||||||||||||||  ||||||||| | ||||||||||||||| ||||||||||| ||||||||||    
T  5819567 atgatgttttattattccaatgttactatcaactagtgtttttaaaaaccg-acctaactagatggttcattat 5819639  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 5833596 - 5833533
Alignment:
Q  31 ggagaggttattggaagaatgtctggtgataccattctcattcaagatgccatgggagaaaagg 94  Q
    |||||||| ||||| |||||||||||||| || |||||||||||||| || |||||||||||||    
T  5833596 ggagaggtaattggtagaatgtctggtgacacaattctcattcaagaggctatgggagaaaagg 5833533  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 406 - 436
Target Start/End: Original strand, 5821563 - 5821593
Alignment:
Q  406 agaaatatacctaaattagaaaacaatgtaa 436  Q
    |||||||||||||||||||||||||||||||    
T  5821563 agaaatatacctaaattagaaaacaatgtaa 5821593  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 51198046 - 51198102
Alignment:
Q  30 tggagaggttattggaagaatgtctggtgataccattctcattcaagatgccatggg 86  Q
    |||||||||| ||||||||||||||||||||||  |||| |||||||||||||||||    
T  51198046 tggagaggttgttggaagaatgtctggtgatactgttcttattcaagatgccatggg 51198102  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 51211570 - 51211636
Alignment:
Q  28 agtggagaggttattggaagaatgtctggtgataccattctcattcaagatgccatgggagaaaagg 94  Q
    ||||| |||||| ||||||||||||| ||||||||  |||| |||||||| ||||||||||| ||||    
T  51211570 agtggtgaggttgttggaagaatgtcaggtgatacagttcttattcaagaagccatgggagacaagg 51211636  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 51155531 - 51155587
Alignment:
Q  30 tggagaggttattggaagaatgtctggtgataccattctcattcaagatgccatggg 86  Q
    |||||||||| ||||||| ||||| ||||||||  |||| ||| |||||||||||||    
T  51155531 tggagaggttgttggaaggatgtcaggtgatacatttctaattaaagatgccatggg 51155587  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 29331299 - 29331236
Alignment:
Q  31 ggagaggttattggaagaatgtctggtgataccattctcattcaagatgccatgggagaaaagg 94  Q
    |||||||| ||| | |||||||||||||| || |||||||||||||| || |||||||||||||    
T  29331299 ggagaggtaattagtagaatgtctggtgacacaattctcattcaagaagctatgggagaaaagg 29331236  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 38527235 - 38527192
Alignment:
Q  43 ggaagaatgtctggtgataccattctcattcaagatgccatggg 86  Q
    ||||||||||||||||||||  |||| |||||||||||||||||    
T  38527235 ggaagaatgtctggtgatactgttcttattcaagatgccatggg 38527192  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 94
Target Start/End: Complemental strand, 49738598 - 49738538
Alignment:
Q  34 gaggttattggaagaatgtctggtgataccattctcattcaagatgccatgggagaaaagg 94  Q
    |||||| |||||||||| || ||||| ||  |||| |||||||||||||||||||| ||||    
T  49738598 gaggttgttggaagaatatcaggtgacacagttcttattcaagatgccatgggagagaagg 49738538  T

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