View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12415_low_3 (Length: 407)
Name: NF12415_low_3
Description: NF12415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12415_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 36999067 - 36999459
Alignment:
| Q |
1 |
aagagttcttcaaaagtatactatttttcctggaattataatgatttttaataccaacattttacattgaaatgcgaaggtgtgacatatttgctagctc |
100 |
Q |
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| T |
36999067 |
aagagttcttcaaaagtatactatttttcctggaattataatgatttttaataccaacattttacattgaaatgcgaaggtgtgacatatttgctagctc |
36999166 |
T |
|
| Q |
101 |
acacaacattaaaaactatccttaactaagaggtaattttatggttaattttgattgaaataatgttgcacctaaaatgtacctaaaaaataataataat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36999167 |
acacaacattaaaaactatccttaactaagaggtaattttatggttaattttgattgaaataatgttgcacctaaaatgtacctaaaaaataataataat |
36999266 |
T |
|
| Q |
201 |
caggcatataccatgattaattacatttgatt--nnnnnnnntcattttatgtgtaactgaatttgtttaggaacatctcttacaaaaaattaacaattt |
298 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
36999267 |
caggcatataccatgattaattacatttgattaaaaaaaaaatcattttatgtgtaactgaatttgtttaggaacatatcttacaaaaaattaacaattt |
36999366 |
T |
|
| Q |
299 |
atttagaaaagaaaatataagttgatactaccctattagtaaaaataagacaaattaaaggaataccttctcttgaagggtggccttggtctt |
391 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36999367 |
attcagaaaagaaaatataagttgatactaccctattagtaaaaataagacaaattaaaggaataccttctcttgaagggtggccttggtctt |
36999459 |
T |
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