View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12415_low_5 (Length: 275)
Name: NF12415_low_5
Description: NF12415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12415_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 20 - 254
Target Start/End: Complemental strand, 21056749 - 21056501
Alignment:
| Q |
20 |
atgtcgagtaaatcaaaatacaggtgcaagagaagcatttttctcaagcgatttaatgtaaattaaacaacgcctaaatatcaagaaatgtatactgtat |
119 |
Q |
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| T |
21056749 |
atgtcgagtaaatcaaaatacaggtgcaagagaagcatttttctcaagcgatttaatgtaaattaaacaatgcttaaatatcaagaaatgtatactgtat |
21056650 |
T |
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| Q |
120 |
aaaattcaggtgcatgttgcataatgtataaaattgtatgattcatattcaccttcgagatcttcatttttgcggctag--------------ttgtttc |
205 |
Q |
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| T |
21056649 |
aaaattcaggtgcatgttgcataatgtataaaattgtatgattcatattcaccttcgagatcttcatttttgcggctagttgtctctatcttgttgtttc |
21056550 |
T |
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| Q |
206 |
ttcaaacaaatcctctactcaaattaggcaacagtagaaccaagatcac |
254 |
Q |
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| T |
21056549 |
ttcaaacaaatcctctactcaaattaggcaacagtagaaccaagatcac |
21056501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 138 - 254
Target Start/End: Original strand, 26365357 - 26365473
Alignment:
| Q |
138 |
gcataatgtataaaattgtatgattcatattcaccttcgagatcttcatttttg--cggctagttgtttcttcaaacaaatcctctactcaaattaggca |
235 |
Q |
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| T |
26365357 |
gcatattgtataaaattgtatgattcat--tcaccttcaagatcttcttttttagtcagcttgttgtctcttcaaccaaatcctctactcaaattaggca |
26365454 |
T |
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| Q |
236 |
acagtagaaccaagatcac |
254 |
Q |
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| T |
26365455 |
acagttggaccaagatcac |
26365473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 111
Target Start/End: Original strand, 26365264 - 26365350
Alignment:
| Q |
26 |
agtaaatcaaaatacaggtg--caagagaagcatttttctcaagcgatttaatgtaaattaaacaacgcctaaatatcaagaaatgta |
111 |
Q |
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| T |
26365264 |
agtaaatcaaaatacaggtgtgcaa-agaagcatgtttctcaaacgattcaatgtgaattaatcaacacctaaatatcaagaaatgta |
26365350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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