View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12415_low_6 (Length: 271)
Name: NF12415_low_6
Description: NF12415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12415_low_6 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 13 - 271
Target Start/End: Complemental strand, 37833285 - 37833023
Alignment:
| Q |
13 |
agcagagataataggggatggtgttttttgttgtcgtactc----acacaaagctggcagggttcatttctatgtaacatgttctaataggttagcatgt |
108 |
Q |
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| T |
37833285 |
agcagagataataggggatggtgttttttgttgtcgtactcctccacacaaggttggcagggttcatttctatgtaacatgttctaataggttagcatgt |
37833186 |
T |
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| Q |
109 |
agtgaagtgcacgaattcgatttccgagtcaatacttctcaagaaatcaacactgcgggagagaacagaagtcgctttcaatacttttaataaataattt |
208 |
Q |
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| T |
37833185 |
agtgaagtgcatgaattcgatttccgagtcaatacttctcaagaaatcaacactgcgggatagaacagaagtcactttcaatacttttaataaataattt |
37833086 |
T |
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| Q |
209 |
aaagaattgttatccctggagtatgacttcccacatagtttagattcaattagtggtaatgag |
271 |
Q |
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| T |
37833085 |
aaagaattgttatccctggagtatgacttcccacatagtttagattcaattagtggtaatgag |
37833023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 37841759 - 37841634
Alignment:
| Q |
54 |
acacaaagctggcagggttcatttctatgtaacatgttctaataggttagcatgtagtgaagtgcacgaattcgatttccgagtcaatacttctcaagaa |
153 |
Q |
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| T |
37841759 |
acacaaggctggaagggttcctttctatgtaacatgttctaataggttagcatgtagtgaagtgcgcgaattcgatttccgagtcaattatactcaagaa |
37841660 |
T |
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| Q |
154 |
atcaacactgcgggagagaacagaag |
179 |
Q |
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| T |
37841659 |
gacaacactgccggtgagaccagaag |
37841634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 132
Target Start/End: Original strand, 1655620 - 1655677
Alignment:
| Q |
75 |
tttctatgtaacatgttctaataggttagcatgtagtgaagtgcacgaattcgatttc |
132 |
Q |
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| T |
1655620 |
tttctatgtaacatgtgccaataggttagcttgcagtgaagtgcgtgaatttgatttc |
1655677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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