View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12415_low_8 (Length: 210)

Name: NF12415_low_8
Description: NF12415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12415_low_8
NF12415_low_8
[»] chr7 (15 HSPs)
chr7 (21-195)||(26179326-26179500)
chr7 (61-192)||(26155449-26155580)
chr7 (21-195)||(26088025-26088199)
chr7 (21-195)||(26111813-26111987)
chr7 (61-195)||(19103317-19103451)
chr7 (61-192)||(26128813-26128944)
chr7 (80-195)||(26186485-26186600)
chr7 (61-195)||(26191508-26191642)
chr7 (73-195)||(26204137-26204259)
chr7 (73-195)||(26223775-26223897)
chr7 (61-189)||(26242646-26242774)
chr7 (61-189)||(26297694-26297822)
chr7 (81-181)||(26302059-26302159)
chr7 (61-189)||(26251094-26251222)
chr7 (78-185)||(26227249-26227356)
[»] chr4 (1 HSPs)
chr4 (64-188)||(44903500-44903624)


Alignment Details
Target: chr7 (Bit Score: 126; Significance: 4e-65; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 21 - 195
Target Start/End: Complemental strand, 26179500 - 26179326
Alignment:
Q  21 ccaagttcctctatgtgtccccttttggccnnnnnnncaccatccttgttggtccaagctgaaactggtcctacactccaagttttgatccccatggtag 120  Q
    ||||||||||||||||||||||||||||||       ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26179500 ccaagttcctctatgtgtccccttttggcctttttttcaccatccttgttagtccaagctgaaactggtcctacactccaagttttgatccccattgtag 26179401  T
Q  121 tgttaataagtttttcataatcactttctaattcatgaaaactattgtatagtgttccataacttcttttctctg 195  Q
    ||||| | | |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  26179400 tgttacttaatttttcataatcactttcaagttcatgaaaactattgtatagtgttccataacttcttttctctg 26179326  T

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Target: chr7; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 61 - 192
Target Start/End: Complemental strand, 26155580 - 26155449
Alignment:
Q  61 catccttgttggtccaagctgaaactggtcctacactccaagttttgatccccatggtagtgttaataagtttttcataatcactttctaattcatgaaa 160  Q
    |||||||||| | ||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||    
T  26155580 catccttgttagcccatgatgaaactggtcctacactccaagttttgatccccatggtagtgttactaagtttttcataatcactttccagttcatgaaa 26155481  T
Q  161 actattgtatagtgttccataacttcttttct 192  Q
    ||||||||||||||||||||||||||||||||    
T  26155480 actattgtatagtgttccataacttcttttct 26155449  T

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Target: chr7; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 21 - 195
Target Start/End: Complemental strand, 26088199 - 26088025
Alignment:
Q  21 ccaagttcctctatgtgtccccttttggccnnnnnnncaccatccttgttggtccaagctgaaactggtcctacactccaagttttgatccccatggtag 120  Q
    ||||| ||||||||||||||||| ||||||       || ||| |||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||    
T  26088199 ccaagctcctctatgtgtcccctattggcctttttttcatcattcttgttggtccaagctgaaactggccctacactccaagatttgatccccattgtag 26088100  T
Q  121 tgttaataagtttttcataatcactttctaattcatgaaaactattgtatagtgttccataacttcttttctctg 195  Q
    || |   ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||  |||||||||    
T  26088099 tgcttccaagtttttcataatcactttccagttcatgaaaactattgtatagtgttccataactaattttctctg 26088025  T

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Target: chr7; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 21 - 195
Target Start/End: Complemental strand, 26111987 - 26111813
Alignment:
Q  21 ccaagttcctctatgtgtccccttttggccnnnnnnncaccatccttgttggtccaagctgaaactggtcctacactccaagttttgatccccatggtag 120  Q
    ||||| ||||||||||||||||| ||||||       || ||| |||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||    
T  26111987 ccaagctcctctatgtgtcccctattggcctttttttcatcattcttgttggtccaagctgaaactggccctacactccaagatttgatccccattgtag 26111888  T
Q  121 tgttaataagtttttcataatcactttctaattcatgaaaactattgtatagtgttccataacttcttttctctg 195  Q
    || |   ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||  |||||||||    
T  26111887 tgcttccaagtttttcataatcactttccagttcatgaaaactattgtatagtgttccataactaattttctctg 26111813  T

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Target: chr7; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 61 - 195
Target Start/End: Original strand, 19103317 - 19103451
Alignment:
Q  61 catccttgttggtccaagctgaaactggtcctacactccaagttttgatccccatggtagtgttaataagtttttcataatcactttctaattcatgaaa 160  Q
    |||||||||| | || |||||||||||||||||||| ||||| |||||||||||  ||||| |||  ||||||| ||||||||||||| | |||||||||    
T  19103317 catccttgttagccctagctgaaactggtcctacacaccaagatttgatccccaatgtagtcttaccaagttttacataatcactttccagttcatgaaa 19103416  T
Q  161 actattgtatagtgttccataacttcttttctctg 195  Q
    |||||||||||||||||||||||||||||||||||    
T  19103417 actattgtatagtgttccataacttcttttctctg 19103451  T

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Target: chr7; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 61 - 192
Target Start/End: Complemental strand, 26128944 - 26128813
Alignment:
Q  61 catccttgttggtccaagctgaaactggtcctacactccaagttttgatccccatggtagtgttaataagtttttcataatcactttctaattcatgaaa 160  Q
    |||||||||| | ||| | ||||||||||||||||||||||| ||||||||||| ||||||||||  ||  ||||||||||||||||| | |||||||||    
T  26128944 catccttgttagcccatgatgaaactggtcctacactccaagatttgatccccaaggtagtgttacaaatgttttcataatcactttccagttcatgaaa 26128845  T
Q  161 actattgtatagtgttccataacttcttttct 192  Q
    ||||||| ||||||||||||||||||||||||    
T  26128844 actattgcatagtgttccataacttcttttct 26128813  T

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Target: chr7; HSP #7
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 80 - 195
Target Start/End: Complemental strand, 26186600 - 26186485
Alignment:
Q  80 tgaaactggtcctacactccaagttttgatccccatggtagtgttaataagtttttcataatcactttctaattcatgaaaactattgtatagtgttcca 179  Q
    ||||||||||||||||||||| | ||||||||||| | |||||||| ||||||||| ||||||||| || | |||||||||||||||||||||||||||     
T  26186600 tgaaactggtcctacactccatgatttgatccccaagatagtgttactaagttttttataatcactctccagttcatgaaaactattgtatagtgttccg 26186501  T
Q  180 taacttcttttctctg 195  Q
    |||||| |||||||||    
T  26186500 taactttttttctctg 26186485  T

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Target: chr7; HSP #8
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 61 - 195
Target Start/End: Complemental strand, 26191642 - 26191508
Alignment:
Q  61 catccttgttggtccaagctgaaactggtcctacactccaagttttgatccccatggtagtgttaataagtttttcataatcactttctaattcatgaaa 160  Q
    ||||||| || | ||||||||||||||||||||||||||||| |||||||||| | ||||| |||  |||||| ||||| |||||||||| |||||||||    
T  26191642 catcctttttagcccaagctgaaactggtcctacactccaagatttgatcccccttgtagtattacaaagtttctcatattcactttctagttcatgaaa 26191543  T
Q  161 actattgtatagtgttccataacttcttttctctg 195  Q
    ||||||||||||||| ||||| ||| ||| |||||    
T  26191542 actattgtatagtgtgccatagcttttttcctctg 26191508  T

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Target: chr7; HSP #9
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 73 - 195
Target Start/End: Complemental strand, 26204259 - 26204137
Alignment:
Q  73 tccaagctgaaactggtcctacactccaagttttgatccccatggtagtgttaataagtttttcataatcactttctaattcatgaaaactattgtatag 172  Q
    |||| |||||||| ||||||| |||||||| ||||||||| || ||||| |||  |||||| |||||||||||||||| |||||||||||||||||||||    
T  26204259 tccatgctgaaaccggtcctatactccaagatttgatccctattgtagttttaccaagtttctcataatcactttctagttcatgaaaactattgtatag 26204160  T
Q  173 tgttccataacttcttttctctg 195  Q
    ||||||| | |||||||||||||    
T  26204159 tgttccaaagcttcttttctctg 26204137  T

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Target: chr7; HSP #10
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 73 - 195
Target Start/End: Complemental strand, 26223897 - 26223775
Alignment:
Q  73 tccaagctgaaactggtcctacactccaagttttgatccccatggtagtgttaataagtttttcataatcactttctaattcatgaaaactattgtatag 172  Q
    |||| |||||||| ||||||| |||||||| ||||||||| || ||||| |||  |||||| |||||||||||||||| |||||||||||||||||||||    
T  26223897 tccatgctgaaaccggtcctatactccaagatttgatccctattgtagttttaccaagtttctcataatcactttctagttcatgaaaactattgtatag 26223798  T
Q  173 tgttccataacttcttttctctg 195  Q
    ||||||| | |||||||||||||    
T  26223797 tgttccaaagcttcttttctctg 26223775  T

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Target: chr7; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 61 - 189
Target Start/End: Complemental strand, 26242774 - 26242646
Alignment:
Q  61 catccttgttggtccaagctgaaactggtcctacactccaagttttgatccccatggtagtgttaataagtttttcataatcactttctaattcatgaaa 160  Q
    |||||||||| | ||| |||||||||||||| |||||||| | |||||| || || ||||| ||| |||| || |||||||||||||| | |||||||||    
T  26242774 catccttgttagcccaggctgaaactggtccgacactccatgatttgattccgattgtagttttactaagattctcataatcactttcaagttcatgaaa 26242675  T
Q  161 actattgtatagtgttccataacttcttt 189  Q
    ||| ||||||||||  ||||| |||||||    
T  26242674 actgttgtatagtgacccatagcttcttt 26242646  T

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Target: chr7; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 61 - 189
Target Start/End: Complemental strand, 26297822 - 26297694
Alignment:
Q  61 catccttgttggtccaagctgaaactggtcctacactccaagttttgatccccatggtagtgttaataagtttttcataatcactttctaattcatgaaa 160  Q
    |||||||||| | ||| |||||||||||||| |||||||| |  ||||| || || ||||| |||| |||||| |||||||||||||| | |||||||||    
T  26297822 catccttgttagcccaggctgaaactggtccgacactccatgacttgattccgattgtagttttaaaaagtttctcataatcactttcaagttcatgaaa 26297723  T
Q  161 actattgtatagtgttccataacttcttt 189  Q
    ||| ||||||||||  ||||| |||||||    
T  26297722 actgttgtatagtgacccatagcttcttt 26297694  T

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Target: chr7; HSP #13
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 81 - 181
Target Start/End: Complemental strand, 26302159 - 26302059
Alignment:
Q  81 gaaactggtcctacactccaagttttgatccccatggtagtgttaataagtttttcataatcactttctaattcatgaaaactattgtatagtgttccat 180  Q
    ||||||||||||||| |||||| |||||| ||||| || || | | |||||||  ||||||||||||| | |||||||||||||||||||||||||||||    
T  26302159 gaaactggtcctacattccaagatttgattcccattgttgtttgactaagtttcacataatcactttcaagttcatgaaaactattgtatagtgttccat 26302060  T
Q  181 a 181  Q
    |    
T  26302059 a 26302059  T

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Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 189
Target Start/End: Complemental strand, 26251222 - 26251094
Alignment:
Q  61 catccttgttggtccaagctgaaactggtcctacactccaagttttgatccccatggtagtgttaataagtttttcataatcactttctaattcatgaaa 160  Q
    |||||||||| | ||| || ||||||||||| |||||||| | |||||| || || ||| | |||  ||| || || |||||| |||| | |||||||||    
T  26251222 catccttgttagcccaggcagaaactggtccgacactccatgatttgattccaattgtacttttacaaagcttctcgtaatcattttcaagttcatgaaa 26251123  T
Q  161 actattgtatagtgttccataacttcttt 189  Q
    ||| ||||||||||  ||||| |||||||    
T  26251122 actgttgtatagtgacccatagcttcttt 26251094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 185
Target Start/End: Complemental strand, 26227356 - 26227249
Alignment:
Q  78 gctgaaactggtcctacactccaagttttgatccccatggtagtgttaataagtttttcataatcactttctaattcatgaaaactattgtatagtgttc 177  Q
    ||||||||||||||||||||||| | |||||||||||| ||  | ||   ||| || |||||||||| ||| | ||| ||||| |||||| |||  ||||    
T  26227356 gctgaaactggtcctacactccatgctttgatccccattgtgctcttgtaaagattctcataatcaccttcaagttcgtgaaagctattgcataaagttc 26227257  T
Q  178 cataactt 185  Q
    ||||||||    
T  26227256 cataactt 26227249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 64 - 188
Target Start/End: Complemental strand, 44903624 - 44903500
Alignment:
Q  64 ccttgttggtccaagctgaaactggtcctacactccaagttttgatccccatggtagtgttaataagtttttcataatcactttctaattcatgaaaact 163  Q
    ||||||| | ||||| |||||||||||||||||||||||  || |||||||| ||||| ||| ||| ||| |||||||||||||| | ||||||||||||    
T  44903624 ccttgttagcccaagttgaaactggtcctacactccaagacttaatccccattgtagttttactaactttctcataatcactttcaagttcatgaaaact 44903525  T
Q  164 attgtatagtgttccataacttctt 188  Q
    |||| ||| ||| ||||||||||||    
T  44903524 attgcatattgtcccataacttctt 44903500  T

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