View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12416_high_1 (Length: 1110)

Name: NF12416_high_1
Description: NF12416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12416_high_1
NF12416_high_1
[»] chr4 (10 HSPs)
chr4 (388-828)||(45858709-45859142)
chr4 (386-734)||(45876731-45877069)
chr4 (46-235)||(45859364-45859557)
chr4 (590-721)||(56208539-56208670)
chr4 (46-223)||(45877974-45878151)
chr4 (584-728)||(47293456-47293600)
chr4 (584-722)||(55705881-55706019)
chr4 (609-717)||(54304249-54304357)
chr4 (104-209)||(56208765-56208870)
chr4 (396-478)||(56208678-56208760)
[»] chr5 (3 HSPs)
chr5 (584-729)||(35854542-35854687)
chr5 (584-660)||(35802504-35802580)
chr5 (586-717)||(10521303-10521434)
[»] chr2 (2 HSPs)
chr2 (579-720)||(24357450-24357591)
chr2 (389-496)||(24357269-24357376)
[»] chr8 (2 HSPs)
chr8 (583-722)||(7972083-7972222)
chr8 (584-717)||(7961718-7961851)


Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 388 - 828
Target Start/End: Complemental strand, 45859142 - 45858709
Alignment:
Q  388 caggccacatgaagcagtgctatttgccaagagaacagaaaatgtttataaacaatttcgagacaaagctgctctgtctagatcaatgactgtatgtttt 487  Q
    ||||||||||||||||  ||||||||||||||||||| | |||| ||||||||||||||||||||||||||| || ||  || | |||||||||||||||    
T  45859142 caggccacatgaagcaaagctatttgccaagagaacacagaatgcttataaacaatttcgagacaaagctgccctttcccgagctatgactgtatgtttt 45859043  T
Q  488 aaatttatttaagaaaaatctattttccatgttttctgttcttccttctcgtatatccatccaatagttacttacagctactgtcttgtcactaggtaga 587  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||| || |||||||||    |||||||||||| ||||||||| ||||||||||||||    
T  45859042 aaatttatttaagaaaaatctattttccatgctttatgttcttcctccttgtatatcca----atagttacttaccgctactgtcctgtcactaggtaga 45858947  T
Q  588 caagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctattgct 687  Q
    |||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||    
T  45858946 caagatggaagaggctgcacaggagagggtttggaccggtaaggatgcagtatctcatggtctggttgatgctattggtgggctatcacgtgctattgct 45858847  T
Q  688 atagccaaactgaaggccgatatacctcaagacagtcaggttgatttaagaacacctttattttgatgtctgttggtttatttgatgatttcatgattcc 787  Q
    ||||||||| |||||||| ||||||||||||| | |||||||||||| |||| ||   ||||||||||||||||| |||||||| |||||||||||||||    
T  45858846 atagccaaattgaaggccaatatacctcaagataatcaggttgatttcagaagac---tattttgatgtctgttgatttatttgctgatttcatgattcc 45858750  T
Q  788 tatcatgattgtccttgacctattccaggttaccgttgtgg 828  Q
    ||| ||||| || ||||| |||| ||||||| | |||||||    
T  45858749 tataatgatcgtgcttgagctatgccaggttgctgttgtgg 45858709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 148; E-Value: 2e-77
Query Start/End: Original strand, 386 - 734
Target Start/End: Complemental strand, 45877069 - 45876731
Alignment:
Q  386 tgcaggccacatgaagcagtgctatttgccaagagaacagaaaatgtttataaacaatttcgagacaaagctgctctgtctagatcaatgactgtatgtt 485  Q
    ||||||||||||||||||| |||||||||||||    || | ||| |||||||||||||||| || || || ||| | || |||||||||||||||||||    
T  45877069 tgcaggccacatgaagcagagctatttgccaagtctgcacagaatttttataaacaatttcgtgataaggcggctttttccagatcaatgactgtatgtt 45876970  T
Q  486 ttaaatttatttaagaaaaatctattttccatgttttctgttcttccttctcgtatatccatccaatagttacttacagctactgtcttgtcactaggta 585  Q
    ||||||| ||  |||||||| ||||||||  ||||||||||||||||  ||  ||| ||||    ||||||||    ||||||| ||  ||| |||||||    
T  45876969 ttaaattcatacaagaaaaagctattttc--tgttttctgttcttcccccttctatgtcca----atagttac----agctactatcccgtcgctaggta 45876880  T
Q  586 gacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctattg 685  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||    
T  45876879 gacaagatggaagaggttgcacaagggagggtttggaccggtaaggatgcagcatcccatggtttggttgatgctattggtgggctatctcgtgctattg 45876780  T
Q  686 ctatagccaaactgaaggccgatatacctcaagacagtcaggttgattt 734  Q
    ||||||| ||| |||| ||  |||||||||||||||| |||||||||||    
T  45876779 ctatagcaaaattgaaagctaatatacctcaagacagacaggttgattt 45876731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 46 - 235
Target Start/End: Complemental strand, 45859557 - 45859364
Alignment:
Q  46 tatattcttcttgggttttgtaatctactaacttgatgacataacttacttttgtagaaaaatttaactatgagaaacttcataagaggattggcttcaa 145  Q
    ||||||||||||| |||||||||||||||| ||||||||||||| |||||| ||||| |||||||| ||||||||||||| || ||  ||||||||||||    
T  45859557 tatattcttcttgagttttgtaatctactagcttgatgacataagttacttatgtaggaaaatttatctatgagaaacttgatgaggagattggcttcaa 45859458  T
Q  146 caaagaagttatatcaaggggtaaatatgccgagctctttgaagctgatcatcgttcttttaggtt----atagattttgttcatttatacatg 235  Q
    ||||||| |||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||     ||||||||||||||||||| ||||    
T  45859457 caaagaacttatatcaaggggtcaatatgccgagatctttgcagctgatcatcgttcttttaggtgcctgatagattttgttcatttattcatg 45859364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 590 - 721
Target Start/End: Complemental strand, 56208670 - 56208539
Alignment:
Q  590 agatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctattgctat 689  Q
    |||||||| ||||||||||||||||||||| ||||||||| |||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  56208670 agatggaagaggttgcacaggggagggtttagaccggtaaagatgcactatctcttggtttggttgatgctattggtgggctatctcgtgctattgctat 56208571  T
Q  690 agccaaactgaaggccgatatacctcaagaca 721  Q
    ||| ||| ||||||| | ||||||||||||||    
T  56208570 agcaaaattgaaggctggtatacctcaagaca 56208539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 46 - 223
Target Start/End: Complemental strand, 45878151 - 45877974
Alignment:
Q  46 tatattcttcttgggttttgtaatctactaacttgatgacataacttacttttgtagaaaaatttaactatgagaaacttcataagaggattggcttcaa 145  Q
    |||||||| |||||||||| ||||||| ||| ||||||||||||||||||||||||| |||||||| |  || ||||||| || ||| |||||| |||||    
T  45878151 tatattctccttgggttttataatctattaagttgatgacataacttacttttgtaggaaaatttagccttgggaaactttatgagaagattggtttcaa 45878052  T
Q  146 caaagaagttatatcaaggggtaaatatgccgagctctttgaagctgatcatcgttcttttaggttatagattttgtt 223  Q
    ||||||| ||||||||||||||||||||||||||||| ||| |||||| || ||||| |||||||  |||| ||||||    
T  45878051 caaagaaattatatcaaggggtaaatatgccgagctccttgcagctgaacaacgttcctttaggtagtagaatttgtt 45877974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 584 - 728
Target Start/End: Original strand, 47293456 - 47293600
Alignment:
Q  584 tagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctat 683  Q
    |||||||||||||| ||||||||||||| ||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||  |||| || |||||    
T  47293456 tagacaagatggaagaggttgcacagggaaggatttggaccagtaaggacgcagtatctcatggtttggttgatgctattggtggactatcgcgcgctat 47293555  T
Q  684 tgctatagccaaactgaaggccgatatacctcaagacagtcaggt 728  Q
    ||||||||| ||| |||||||| ||||||||||| |||| |||||    
T  47293556 tgctatagcaaaattgaaggccaatatacctcaaaacagacaggt 47293600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 584 - 722
Target Start/End: Original strand, 55705881 - 55706019
Alignment:
Q  584 tagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctat 683  Q
    |||||||||||||| ||||||| || |||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||| |||| ||||||||    
T  55705881 tagacaagatggaagaggttgcgcatgggagggtttggaccggtaaagacgcagcatctcatggtttggttgatgctattggtgggatatcgcgtgctat 55705980  T
Q  684 tgctatagccaaactgaaggccgatatacctcaagacag 722  Q
    ||||||  | ||| |||| ||  ||||||||||| ||||    
T  55705981 tgctattacaaaattgaaagctaatatacctcaaaacag 55706019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 609 - 717
Target Start/End: Original strand, 54304249 - 54304357
Alignment:
Q  609 ggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctattgctatagccaaactgaaggccgat 708  Q
    ||||| ||||||||| |||||||| |||  |||||  |||||||||||||||||||| ||| | |||||||||||||||||||| ||| |||||||| ||    
T  54304249 ggggaaggtttggactggtaaggacgcaacatctctcggtttggttgatgctattggcgggatgtctcgtgctattgctatagcaaaattgaaggccaat 54304348  T
Q  709 atacctcaa 717  Q
    |||||||||    
T  54304349 atacctcaa 54304357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 104 - 209
Target Start/End: Complemental strand, 56208870 - 56208765
Alignment:
Q  104 aaaatttaactatgagaaacttcataagaggattggcttcaacaaagaagttatatcaaggggtaaatatgccgagctctttgaagctgatcatcgttct 203  Q
    ||||||||||| |||||||||| |  ||| ||||||  ||||||||||||||||||| | |||||||||| |||||||   ||| | |||||| ||||||    
T  56208870 aaaatttaactttgagaaactttaagagaagattggtctcaacaaagaagttatatccaagggtaaatattccgagcttaatgatgttgatcagcgttct 56208771  T
Q  204 tttagg 209  Q
    ||||||    
T  56208770 tttagg 56208765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 396 - 478
Target Start/End: Complemental strand, 56208760 - 56208678
Alignment:
Q  396 atgaagcagtgctatttgccaagagaacagaaaatgtttataaacaatttcgagacaaagctgctctgtctagatcaatgact 478  Q
    ||||||||| ||||||||| |||||| || || || ||||||||||||||||||| || || ||||| || ||||||||||||    
T  56208760 atgaagcagagctatttgctaagagagcacaacatatttataaacaatttcgagataatgcggctctttccagatcaatgact 56208678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 1e-47; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 584 - 729
Target Start/End: Original strand, 35854542 - 35854687
Alignment:
Q  584 tagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctat 683  Q
    ||||||||||| ||||||||||||| |||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||| ||||||||    
T  35854542 tagacaagatgaaaaaggttgcacatgggaggatttggaccggtaaggacgcagcatctcatggtttggttgatgctattggtgggatatcgcgtgctat 35854641  T
Q  684 tgctatagccaaactgaaggccgatatacctcaagacagtcaggtt 729  Q
    ||||||||| ||| |||||||| ||||||||||| |||| ||||||    
T  35854642 tgctatagcaaaattgaaggccaatatacctcaaaacagacaggtt 35854687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 584 - 660
Target Start/End: Complemental strand, 35802580 - 35802504
Alignment:
Q  584 tagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgct 660  Q
    ||||||||||| ||||||||||||| |||||| |||||||||||||||| |||| ||||||||||||||||||||||    
T  35802580 tagacaagatgaaaaaggttgcacatgggaggatttggaccggtaaggacgcagcatctcatggtttggttgatgct 35802504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 586 - 717
Target Start/End: Original strand, 10521303 - 10521434
Alignment:
Q  586 gacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctattg 685  Q
    ||||||||| || || || ||||  ||||| |||||| ||| ||||| |||| |||||| |||||||||||||||||||||||| |||| ||||||||||    
T  10521303 gacaagatgaaagagattccacataggaggatttggatcgggaaggacgcagcatctcaaggtttggttgatgctattggtgggatatcgcgtgctattg 10521402  T
Q  686 ctatagccaaactgaaggccgatatacctcaa 717  Q
    |||| || ||| | |||||| |||||||||||    
T  10521403 ctatcgcaaaattcaaggccaatatacctcaa 10521434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 2e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 579 - 720
Target Start/End: Original strand, 24357450 - 24357591
Alignment:
Q  579 ctaggtagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgt 678  Q
    |||||| ||||||||||| ||||| ||||||||||| |||||||| ||||| ||||||| ||| ||||||||||||||||||||||||||  | || ||     
T  24357450 ctaggtggacaagatggagaaggtagcacaggggagagtttggactggtaaagatgcagcatcacatggtttggttgatgctattggtggcctttcccga 24357549  T
Q  679 gctattgctatagccaaactgaaggccgatatacctcaagac 720  Q
    |||||||| ||||| ||| |||||||| ||||||||||||||    
T  24357550 gctattgccatagcaaaattgaaggccaatatacctcaagac 24357591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 389 - 496
Target Start/End: Original strand, 24357269 - 24357376
Alignment:
Q  389 aggccacatgaagcagtgctatttgccaagagaacagaaaatgtttataaacaatttcgagacaaagctgctctgtctagatcaatgactgtatgtttta 488  Q
    |||||| ||||||||| ||||||||||||     || | ||||  |||||||||||||||||||| || ||| | || ||||| ||||||||||||| ||    
T  24357269 aggccagatgaagcagagctatttgccaaatctgcacagaatgcatataaacaatttcgagacaaggcagctttatccagatctatgactgtatgttcta 24357368  T
Q  489 aatttatt 496  Q
    ||||||||    
T  24357369 aatttatt 24357376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 3e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 583 - 722
Target Start/End: Complemental strand, 7972222 - 7972083
Alignment:
Q  583 gtagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgcta 682  Q
    ||||||||||||||| ||||||||||| ||||| ||||||||||||| |||||||||||| |||||||||| ||||||||  ||||  |||| |||||||    
T  7972222 gtagacaagatggaagaggttgcacagaggaggatttggaccggtaaagatgcagtatctaatggtttggtcgatgctatcagtggactatcgcgtgcta 7972123  T
Q  683 ttgctatagccaaactgaaggccgatatacctcaagacag 722  Q
    |||||||||| ||| |||||||| || | |||||| ||||    
T  7972122 ttgctatagcaaaattgaaggccaatcttcctcaaaacag 7972083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 584 - 717
Target Start/End: Complemental strand, 7961851 - 7961718
Alignment:
Q  584 tagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctat 683  Q
    |||||||||||||| |||||||||| |||||  ||||||| ||||| |||||| ||||| ||| |||||| ||||||||||||||  |||| |  |||||    
T  7961851 tagacaagatggaagaggttgcacaagggagaatttggactggtaaagatgcaatatctaatgatttggtcgatgctattggtggaatatcgcacgctat 7961752  T
Q  684 tgctatagccaaactgaaggccgatatacctcaa 717  Q
    ||||||||| ||| |||||||| |||| ||||||    
T  7961751 tgctatagcaaaattgaaggccaatattcctcaa 7961718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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