View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12416_high_3 (Length: 287)
Name: NF12416_high_3
Description: NF12416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12416_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 15290014 - 15289926
Alignment:
| Q |
17 |
catagccaaattatttgaaaggaaaaaactaaatcatgcatttaatgtgtagaagactttgacaatcgcttgttgctattttccttttgg |
106 |
Q |
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| T |
15290014 |
catagccaaactatttgaaaggaaaaa-ctaagccatgcatttaatgtgtagaagactttgacaattgcttgttgcaattttccttttgg |
15289926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 15302721 - 15302633
Alignment:
| Q |
17 |
catagccaaattatttgaaaggaaaaaactaaatcatgcatttaatgtgtagaagactttgacaatcgcttgttgctattttccttttgg |
106 |
Q |
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| T |
15302721 |
catagccaaactatttgaaaggaaaat-ctaagccatgcatttaatgtgtagaagactttgacaattgcttgttgcgattttccttttgg |
15302633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 8e-27; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 17 - 123
Target Start/End: Complemental strand, 14173714 - 14173605
Alignment:
| Q |
17 |
catagccaaattatttgaaaggaaaaaactaaatcatgcatttaatgtgtagaagactttgacaatcgcttgttgctattttccttt----tggaacata |
112 |
Q |
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| T |
14173714 |
catagccaaactatttgaaaggaaaaa-ctaagccatgcatttaatgtgtagaagaatttgacaattgcttgttgcaattttccttttggctggaacata |
14173616 |
T |
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| Q |
113 |
ccccacgtggt |
123 |
Q |
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| T |
14173615 |
ccccacgtggt |
14173605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 17 - 123
Target Start/End: Complemental strand, 14178468 - 14178359
Alignment:
| Q |
17 |
catagccaaattatttgaaaggaaaaaactaaatcatgcatttaatgtgtagaagactttgacaatcgcttgttgctattttccttt----tggaacata |
112 |
Q |
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| T |
14178468 |
catagccaaactatttgaaaggaaaaa-ctaagccatgcatttaatgtgtagaagaatttgacaattgcttgttgcaattttccttttggctggaacata |
14178370 |
T |
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| Q |
113 |
ccccacgtggt |
123 |
Q |
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| T |
14178369 |
ccccacgtggt |
14178359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 17 - 123
Target Start/End: Complemental strand, 44161364 - 44161255
Alignment:
| Q |
17 |
catagccaaattatttgaaaggaaaaaactaaatcatgcatttaatgtgtagaagactttgacaatcgcttgttgctattttccttt----tggaacata |
112 |
Q |
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| T |
44161364 |
catagccaaactatttgaaaggaaaaa-ctaagccatgcatttaatgtgtagaagaatttgacaattgcttgttgcaattttccttttggctggaacata |
44161266 |
T |
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| Q |
113 |
ccccacgtggt |
123 |
Q |
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| T |
44161265 |
ccccacgtggt |
44161255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 121 - 181
Target Start/End: Original strand, 42911998 - 42912059
Alignment:
| Q |
121 |
ggtttcatttggcttcacgttt-attatttatgtttaaattgaaagctcgatcataattgaa |
181 |
Q |
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| T |
42911998 |
ggtttcatttggtttcacgttttattatttatgtttaaattgaaagctcgatcataattgaa |
42912059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 42913016 - 42913065
Alignment:
| Q |
205 |
cttttatatttgagctgagtttatgtgaactatttgtatttgataatttg |
254 |
Q |
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| T |
42913016 |
cttttatatttgagctgagtttatgtgaactatttgtatgtgataatttg |
42913065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 123
Target Start/End: Original strand, 42911899 - 42911968
Alignment:
| Q |
58 |
ttaatgtgtagaagactttgacaatcgcttgttgctattttccttt----tggaacataccccacgtggt |
123 |
Q |
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| T |
42911899 |
ttaatgtgtagaagactttgacaattgtttgttgcaattttccttttagctggaacataccccacgtggt |
42911968 |
T |
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