View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12416_low_2 (Length: 398)
Name: NF12416_low_2
Description: NF12416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12416_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 42198148 - 42198534
Alignment:
| Q |
1 |
cttgtgttttttacctgcaacatacaaagttactcccaacttgtgcataacttgacttgattgttaaggccgcatagtttgttgttaccttggagatcaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
42198148 |
cttgtgttttttacctgcaacatacaaagttactcccaacttgtgcataactt-----gattgttaaggccgcatagtttgttgttaccttggagatcaa |
42198242 |
T |
|
| Q |
101 |
cctagcttaggttcataaaaacacctttcataggaatgtctccttccaagtcgttgaaagacaaatttaatctcaccatatactccagcttttctaaact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42198243 |
cctagcttaggttcataaaaacacctttcataggaatgtctccttccaagtcgttgaaagacaaatttaatctcaccatatactccagcttttctaaact |
42198342 |
T |
|
| Q |
201 |
atcaggaattagaccagtgagattgtttgatg-atagatccaaagtcacaagtgatgctaaatcccctagactatttggaatcgagccactaaatttgtt |
299 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
42198343 |
atcaggaattagaccagtgagattgtttgatgaatagatccaaagtcacaagtgatgctaaatcccctagactatttggaattgagccactaaatttgtt |
42198442 |
T |
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| Q |
300 |
tctagccatcacaagtattttcaatccgc----ttacttctaatttaggaatgttccctgacaaccaaatgttcgaaataaccatggtctct |
387 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42198443 |
tctagccatcacaagtattttcaatccgcttaattacttctaatttaggaatgttccctgacaaccagttgttcgaaataaccatggtctct |
42198534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 42210724 - 42211076
Alignment:
| Q |
1 |
cttgtgttttttacctgcaacatacaaagttactcccaacttgtgcataacttgacttgattgttaaggccgcatagtttgttgttaccttggagatcaa |
100 |
Q |
| |
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||||| ||| |||||||||||| ||||||| ||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42210724 |
cttgtttttcttacctgcaacacacaaagtgactcctaacttgtgcataactt-----gattgttaaggccacatagtttgttgttaccttggagatcaa |
42210818 |
T |
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| Q |
101 |
cctagcttaggttcataaaaacacctttcataggaatgtctccttccaagtcgttgaaagacaaatttaatctcaccatatactccagcttttctaaact |
200 |
Q |
| |
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||| ||||||||||||||||| ||||| |||||||| || |||||||| | |||||| |||||||||||| |||||||||||| |||||||||||||| |
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| T |
42210819 |
cctggcttaggttcataaaaataccttccataggaacttccccttccaatttgttgaaggacaaatttaatttcaccatatacttgagcttttctaaact |
42210918 |
T |
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| Q |
201 |
atcaggaattagaccagtgagattgtttgatgatagatccaaagtcacaagtgatgctaaatcccctagactatttggaatcgagccactaaatttgttt |
300 |
Q |
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||||| ||| ||||||||||| |||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
42210919 |
ctcagggattggaccagtgagactgtttgatgatagatctaaagtcacaagggatggcaaatcccctagactatttggaattgagccactaaaattgttt |
42211018 |
T |
|
| Q |
301 |
ctagccatcacaagtattttcaatccgcttacttctaatttaggaatgttccctgaca |
358 |
Q |
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|| ||||||| |||| ||||||||||| | ||||| | |||||||||||||||||||| |
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| T |
42211019 |
cttgccatcataagtgttttcaatccgttaacttcgattttaggaatgttccctgaca |
42211076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 55 - 358
Target Start/End: Original strand, 42222989 - 42223292
Alignment:
| Q |
55 |
acttgattgttaaggccgcatagtttgttgttaccttggagatcaacctagcttaggttcataaaaacacctttcataggaatgtctccttccaagtcgt |
154 |
Q |
| |
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|||| |||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||| |||| |||||||| || |||||||| | || |
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| T |
42222989 |
acttcattgttaaggccacatagtttgttgttaccttggatatcaacctggcttaggttcataaaaacgccttccataggaacttccccttccaatttgt |
42223088 |
T |
|
| Q |
155 |
tgaaagacaaatttaatctcaccatatactccagcttttctaaactatcaggaattagaccagtgagattgtttgatgatagatccaaagtcacaagtga |
254 |
Q |
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|||| |||||||||||| ||| ||||||||| |||||||||||||| | |||||| ||||||||||||||||||||||||||| ||||||||||| || |
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| T |
42223089 |
tgaaggacaaatttaatttcatcatatactcaagcttttctaaactcacgggaattgaaccagtgagattgtttgatgatagatctaaagtcacaaggga |
42223188 |
T |
|
| Q |
255 |
tgctaaatcccctagactatttggaatcgagccactaaatttgtttctagccatcacaagtattttcaatccgcttacttctaatttaggaatgttccct |
354 |
Q |
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||||||||| ||||||||||||||||| ||||||||||| |||||||| |||||||| ||| ||||||||||| ||||| | |||||||||||||||| |
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| T |
42223189 |
tgctaaatcacctagactatttggaattgagccactaaaattgtttcttgccatcactagtgttttcaatccgtcaacttcgattttaggaatgttccct |
42223288 |
T |
|
| Q |
355 |
gaca |
358 |
Q |
| |
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|||| |
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| T |
42223289 |
gaca |
42223292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 55 - 234
Target Start/End: Complemental strand, 33701108 - 33700929
Alignment:
| Q |
55 |
acttgattgttaaggccgcatagtttgttgttaccttggagatcaacctagcttaggttcataaaaacacctttcataggaatgtctccttccaagtcgt |
154 |
Q |
| |
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|||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||| | || |
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| T |
33701108 |
acttcattgttaacgccacatagtttgttgttaccttggagatcaacctagcttaggttcataaaaacaccttccataggaacttccccttccaatttgt |
33701009 |
T |
|
| Q |
155 |
tgaaagacaaatttaatctcaccatatactccagcttttctaaactatcaggaattagaccagtgagattgtttgatgat |
234 |
Q |
| |
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|||| |||||||||||| ||| ||||||||| |||||||||||||| | |||||| ||||||||||||||||||||||| |
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| T |
33701008 |
tgaaggacaaatttaatttcatcatatactcaagcttttctaaactcacgggaattggaccagtgagattgtttgatgat |
33700929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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