View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12416_low_4 (Length: 263)
Name: NF12416_low_4
Description: NF12416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12416_low_4 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 42197867 - 42198129
Alignment:
| Q |
1 |
tttgactttcataagtgctgatgttaaacacacccttgtaaacagagccaaaccctccttttccaaccaagtttgcatctgagaaattgtttgtagcaag |
100 |
Q |
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| T |
42197867 |
tttgactttcataagtgctgatgttaagcacacccttgtaaacagagccaaaccctccttttccaaccaagtttgcatctgagaaattgtttgtagcaag |
42197966 |
T |
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| Q |
101 |
cctaatatcactgtatgatacattttgaggcaaccaatttagaggagttgatgacaaacttgttttctccaccttgtgtttctttctttaaggacatttg |
200 |
Q |
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| T |
42197967 |
cctaatatcactgtatgatacattttgaggcaaccaatttagaggagttgatgacaaacttgttttctccaccttgtgtttctttctttaaggacatttg |
42198066 |
T |
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| Q |
201 |
cagccacagtagatagagaattgacgtgaacaaaacagtagaacctgtaattggtagtatgat |
263 |
Q |
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| T |
42198067 |
cagccacagtagatagagaattgacgtgaacaaaacagtagaacctgtaattggtagtatgat |
42198129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 42210444 - 42210705
Alignment:
| Q |
1 |
tttgactttcataagtgctgatgttaaacacacccttgtaaacagagccaaaccctccttttccaaccaagtttgcatctgagaaattgtttgtagcaag |
100 |
Q |
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| T |
42210444 |
tttgattttcataactgctgatgttgaacacacccttgtaaacagatccaaagcctccttttccaaccatatttgcagctgaaaaattgttcgtagcaag |
42210543 |
T |
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| Q |
101 |
cctaatatcactgtatgatacattttgaggcaaccaatttagaggagttgatgacaaacttgttttctccaccttgtgtttctttctttaaggacatttg |
200 |
Q |
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| T |
42210544 |
cctaatatcaccataggatatattttgatgcaacccttttatagtagttgatgacaaacttgttttctctgccttgtgtttc-ttctttaaggacattag |
42210642 |
T |
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| Q |
201 |
cagccacagtagatagagaattgacgtgaacaaaacagtagaacctgtaattggtagtatgat |
263 |
Q |
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| T |
42210643 |
cagccaaaatagatagatcattgaagcaaacaaaacagccgcacctataatcgctagtatgat |
42210705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 42222669 - 42222929
Alignment:
| Q |
1 |
tttgactttcataagtgctgatgttaaacacacccttgtaaacagagccaaaccctccttttccaaccaagtttgcatctgagaaattgtttgtagcaag |
100 |
Q |
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||||||||||| ||||||| ||||| |||||||| ||||||||||| |||||||||||||||||||||||||||| | |||| || |||||||||||||| |
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| T |
42222669 |
tttgactttcaaaagtgcttatgttgaacacacctttgtaaacagatccaaaccctccttttccaaccaagtttgtagctgaaaagttgtttgtagcaag |
42222768 |
T |
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| Q |
101 |
cctaatatcactgtatgatacattttgaggcaaccaatttagaggagttgatgacaaacttgttttctccaccttgtgtttctttctttaaggacatttg |
200 |
Q |
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| T |
42222769 |
cttaatatcaccataggatatattttgagtcaaccccaatagagtggttgatgacaaaattgttttctcctccttgcgcttc-ttcttggagaacataag |
42222867 |
T |
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| Q |
201 |
cagccacagtagatagagaattgacgtgaacaaaacagtagaacctgtaattggtagtatga |
262 |
Q |
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| T |
42222868 |
tagccacagcagatagagcattgacgtgaataaaacagtaccgcctgtaattgctagtatga |
42222929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 149 - 263
Target Start/End: Complemental strand, 33701289 - 33701176
Alignment:
| Q |
149 |
tgatgacaaacttgttttctccaccttgtgtttctttctttaaggacatttgcagccacagtagatagagaattgacgtgaacaaaacagtagaacctgt |
248 |
Q |
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| T |
33701289 |
tgatgacaaacttgttttctccgccttgtgtttctt-ctttaaggacattagcagccaaaatagatagatcattgaagcgaacaaaacagcagcacctat |
33701191 |
T |
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| Q |
249 |
aattggtagtatgat |
263 |
Q |
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||| | ||||||||| |
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| T |
33701190 |
aatcgctagtatgat |
33701176 |
T |
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