View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12416_low_5 (Length: 245)
Name: NF12416_low_5
Description: NF12416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12416_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 42222671 - 42222441
Alignment:
| Q |
1 |
aaacaacgacacttgctgttaaagtttttgacctgcaacaaagcaaggcctctcagagtttttgtgcagaatatgaagctttgaaaaatgttaggcatcg |
100 |
Q |
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| T |
42222671 |
aaacaactacacttgctgttaaagttcttgacctgcaacaaagcaaagcctctcagagttttagtgcagaatgtgaagctttgaaaaatgttaggcatcg |
42222572 |
T |
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| Q |
101 |
gaatctggtaaaggtgatcacttcttgctccagcactgattacaaggggtgtgattttaaggcccttgttatgcaattcatgcctaatggtaatttggag |
200 |
Q |
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| T |
42222571 |
gaatctggtaaaggtgatcacttcttgctccagcactgactacaagggggatgattttaaggcccttgttttgcaattcatgcctaatggtaatttggag |
42222472 |
T |
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| Q |
201 |
acgagtttatacccagaagatcttgaatcag |
231 |
Q |
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| T |
42222471 |
atgagtttatacccggaagattttgagtcag |
42222441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 9 - 231
Target Start/End: Complemental strand, 42210438 - 42210216
Alignment:
| Q |
9 |
acacttgctgttaaagtttttgacctgcaacaaagcaaggcctctcagagtttttgtgcagaatatgaagctttgaaaaatgttaggcatcggaatctgg |
108 |
Q |
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|||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42210438 |
acacttgctgttaaagttcttgacctgcaacaaagcaaagcctctcagagttttagtgcagaatgtgaagctttgaaaaatgttaggcatcggaatctgg |
42210339 |
T |
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| Q |
109 |
taaaggtgatcacttcttgctccagcactgattacaaggggtgtgattttaaggcccttgttatgcaattcatgcctaatggtaatttggagacgagttt |
208 |
Q |
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||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
42210338 |
taaaggtgatcacttcttgctccagcactgactacaagggggatgattttaaggcccttgttttgcaattcatgcctaatggtaatttggagatgagttt |
42210239 |
T |
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| Q |
209 |
atacccagaagatcttgaatcag |
231 |
Q |
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|||||| |||||| |||| |||| |
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| T |
42210238 |
atacccggaagattttgagtcag |
42210216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 42197869 - 42197748
Alignment:
| Q |
1 |
aaacaacgacacttgctgttaaagtttttgacctgcaacaaagcaaggcctctcagagtttttgtgcagaatatgaagctttgaaaaatgttaggcatcg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
42197869 |
aaacaacgacacttgctgttaaagtttttgacctgcaacaaagcaaggcctctcagagtttttgtgcagaatgtgaagctttgaaaaatgttaggcatcg |
42197770 |
T |
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| Q |
101 |
gaatctggtaaaggtgatcact |
122 |
Q |
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|||||||||||||||||||||| |
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| T |
42197769 |
gaatctggtaaaggtgatcact |
42197748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 117 - 189
Target Start/End: Complemental strand, 42191202 - 42191130
Alignment:
| Q |
117 |
atcacttcttgctccagcactgattacaaggggtgtgattttaaggcccttgttatgcaattcatgcctaatg |
189 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42191202 |
atcacttcttgctccagcactgattacaaggggtgtgattttaaggcccttgttatgcaattcatgcctaatg |
42191130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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