View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12416_low_6 (Length: 202)
Name: NF12416_low_6
Description: NF12416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12416_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 31524873 - 31525042
Alignment:
| Q |
15 |
cacagaggtagtcttcttccccaatgtcaaagcacaaaatgattcatagagtaacacctgcagaatcaaacagataggttaaactaatatcaatgtataa |
114 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
31524873 |
cacagaggcagtcttcttccccaatgtcaaagcacaaaatgattcatagagtaacaactgcagaatcaaacagatagattaaactaatatcaatgtataa |
31524972 |
T |
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| Q |
115 |
gcgatataatcttaggtccagtggagctgcgaataaaacacataacaactgattagaactaactattatt |
184 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31524973 |
gcgatataatcttaggtccagtggagctgcgaataaaacacataacaactgattagaactaacaattatt |
31525042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 15 - 184
Target Start/End: Complemental strand, 33366628 - 33366459
Alignment:
| Q |
15 |
cacagaggtagtcttcttccccaatgtcaaagcacaaaatgattcatagagtaacacctgcagaatcaaacagataggttaaactaatatcaatgtataa |
114 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||| |
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| T |
33366628 |
cacagaggcagtcttcttccccaatgtcaaagcacaaaatgattcatagagtaacaactacagaatcaaacagatagattaaactaatatcaatgtataa |
33366529 |
T |
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| Q |
115 |
gcgatataatcttaggtccagtggagctgcgaataaaacacataacaactgattagaactaactattatt |
184 |
Q |
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| T |
33366528 |
gcgatataatcttaggtccagtggagctgcaaataaaacacataacaactgattagaactaacaattatt |
33366459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 49194830 - 49194999
Alignment:
| Q |
15 |
cacagaggtagtcttcttccccaatgtcaaagcacaaaatgattcatagagtaacacctgcagaatcaaacagataggttaaactaatatcaatgtataa |
114 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||| |
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| T |
49194830 |
cacagaggcagtcttcttccccaatgtcaaagcacaaaatgattcatagagtaacaactacagaatcaaacagatagattaaactaatatcaatgtataa |
49194929 |
T |
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| Q |
115 |
gcgatataatcttaggtccagtggagctgcgaataaaacacataacaactgattagaactaactattatt |
184 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
49194930 |
gcgatataatcttaggtccagtggagctgcaaataaaacacataacaactgattagaactaacaattatt |
49194999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 41437031 - 41436949
Alignment:
| Q |
19 |
gaggtagtcttcttccccaatgtcaaagcacaaaatgattcatagagtaacacctgcagaatcaaacagataggttaaactaa |
101 |
Q |
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|||||||||||||| ||||| |||||| |||||||||| |||| |||||| |||||||||||||||| || ||||||||| |
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| T |
41437031 |
gaggtagtcttcttgcccaaagtcaaatgacaaaatgatccatatggtaacatatgcagaatcaaacagagagattaaactaa |
41436949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 42934158 - 42934240
Alignment:
| Q |
19 |
gaggtagtcttcttccccaatgtcaaagcacaaaatgattcatagagtaacacctgcagaatcaaacagataggttaaactaa |
101 |
Q |
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||||| |||||||| ||||| |||||| |||||||||| |||| |||||| |||| ||||||||||| || ||||||||| |
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| T |
42934158 |
gaggtggtcttcttgcccaaagtcaaatgacaaaatgatccatatggtaacatatgcataatcaaacagagagattaaactaa |
42934240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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