View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12417_high_1_N (Length: 463)

Name: NF12417_high_1_N
Description: NF12417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12417_high_1_N
NF12417_high_1_N
[»] chr4 (5 HSPs)
chr4 (22-462)||(43963178-43963615)
chr4 (89-167)||(12861423-12861502)
chr4 (85-121)||(6210664-6210700)
chr4 (85-167)||(47861944-47862028)
chr4 (85-121)||(47863640-47863676)
[»] chr8 (3 HSPs)
chr8 (85-161)||(40462288-40462365)
chr8 (96-180)||(9756760-9756845)
chr8 (85-121)||(14101048-14101084)
[»] scaffold0262 (1 HSPs)
scaffold0262 (85-180)||(2758-2853)
[»] chr1 (2 HSPs)
chr1 (85-167)||(37182084-37182165)
chr1 (85-121)||(21749247-21749283)
[»] chr6 (1 HSPs)
chr6 (89-121)||(35223191-35223223)


Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 22 - 462
Target Start/End: Original strand, 43963178 - 43963615
Alignment:
Q  22 acatcatcatatttgtccagtaatatgccatcaaggttcaaaccagataatcttctaagagagtcttctaatgacaagggggaatctccaagttattttt 121  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43963178 acatcatcatatttgtccagtaatatgccattagggttcaaaccagataatcttctaagagagtcttctaatgacaagggggaatctccaagtttttttt 43963277  T
Q  122 -atctagggggcaaacaaaaatgcacccatatggcagggggtaaaagtctttgaacccttaaaagaaacacttcaaaacactgaaacaccacactaatgc 220  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43963278 tatctagggggcaaacaaaaatgcacccatatggcagggggtaaaagtctttgaacccttaaaagaaacacttcaaaacactgaaacaccacactaatgc 43963377  T
Q  221 atgcaaaacagtataaaatagagaaaacgatgaaataaccaacaagaacatcgaagttaatgggatgtaaggccttacaagcccattccggcagcaaagc 320  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  43963378 atgcaaa-cagtataaaatagagaaaacgatgaaataaccaacaagaacatcgaagttaatgggatgtaaggccttacaagcccattccggcggcaaagc 43963476  T
Q  321 cgttatcgacaaacatcaagagccggaaaacgaacacagcagtgtagtccacctgaagaaaagtggaagnnnnnnnnnnggatgactaacgatataatct 420  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||    
T  43963477 cgttatcgacaaacatcaagagccggaaaacgaacacagcagtgtagtccacctgaagaaaagtggaa---aaaaaaatggatgactaacgatataatct 43963573  T
Q  421 taacaagggagctaaaaacgcaatgatcttaaaaaggaaacc 462  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  43963574 taacaaaggagctaaaaacgcaatgatcttaaaaaggaaacc 43963615  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 167
Target Start/End: Complemental strand, 12861502 - 12861423
Alignment:
Q  89 ctaatgacaagggggaatctccaagttatttttat-ctagggggcaaacaaaaatgcacccatatggcagggggtaaaag 167  Q
    ||||||||||||||||||||||||||| ||||| |  ||||||| |||| ||||  | |||| || ||||||||||||||    
T  12861502 ctaatgacaagggggaatctccaagttttttttttgttagggggtaaaccaaaacacccccaaatagcagggggtaaaag 12861423  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 121
Target Start/End: Complemental strand, 6210700 - 6210664
Alignment:
Q  85 tcttctaatgacaagggggaatctccaagttattttt 121  Q
    |||||||||| |||||||||||||||||||| |||||    
T  6210700 tcttctaatggcaagggggaatctccaagtttttttt 6210664  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 167
Target Start/End: Complemental strand, 47862028 - 47861944
Alignment:
Q  85 tcttctaatgacaagggggaatctccaagttatttttatc-ta-gggggcaaacaaaaatgcacccatatggcagggggtaaaag 167  Q
    |||||||||| |||||||| ||||||||||| ||||| || || ||||| |||| ||||  | |||| |||||||||||||||||    
T  47862028 tcttctaatggcaaggggggatctccaagttttttttctcgtaggggggtaaaccaaaagacccccaaatggcagggggtaaaag 47861944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 121
Target Start/End: Original strand, 47863640 - 47863676
Alignment:
Q  85 tcttctaatgacaagggggaatctccaagttattttt 121  Q
    |||||||||||| |||||||||||||||||| |||||    
T  47863640 tcttctaatgacgagggggaatctccaagtttttttt 47863676  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 40462365 - 40462288
Alignment:
Q  85 tcttctaatgacaagggggaatctccaagttatttttat-ctagggggcaaacaaaaatgcacccatatggcaggggg 161  Q
    |||||||||| |||||||||||||||||||| ||||| | |||||||| |||| ||||  ||||||||||||||||||    
T  40462365 tcttctaatggcaagggggaatctccaagttttttttttcctagggggtaaaccaaaagtcacccatatggcaggggg 40462288  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 180
Target Start/End: Original strand, 9756760 - 9756845
Alignment:
Q  96 caagggggaatctccaagttatttttatctaggg-ggcaaacaaaaatgcacccatatggcagggggtaaaagtctttgaaccctt 180  Q
    |||||||||||||||||||| |||||   ||||| || |||| |||| || | |||||| ||||||||||||||| || |||||||    
T  9756760 caagggggaatctccaagttttttttccgtagggaggtaaaccaaaaggcgctcatatgacagggggtaaaagtcatttaaccctt 9756845  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 121
Target Start/End: Original strand, 14101048 - 14101084
Alignment:
Q  85 tcttctaatgacaagggggaatctccaagttattttt 121  Q
    |||||||||| |||||||||||||||||||| |||||    
T  14101048 tcttctaatggcaagggggaatctccaagtttttttt 14101084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 180
Target Start/End: Complemental strand, 2853 - 2758
Alignment:
Q  85 tcttctaatgacaagggggaatctccaagttatttttatcta-gggggcaaacaaaaatgcacccatatggcaggggg-taaaagtctttgaaccctt 180  Q
    |||||||||| |||||||||||||||||||  |||||  ||| ||||| |||| ||||  |||||||||| ||||||| ||||||||| | |||||||    
T  2853 tcttctaatggcaagggggaatctccaagt--ttttttcctaggggggtaaaccaaaagtcacccatatgacagggggataaaagtctattaaccctt 2758  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 167
Target Start/End: Complemental strand, 37182165 - 37182084
Alignment:
Q  85 tcttctaatgacaagggggaatctccaagttatttttatctagggggcaaacaaaaatgcacccatatggcagggggtaaaag 167  Q
    ||||||||||||||||| |||||| |||||| |||||  |||||||| || | ||||  | ||||||| ||||||||||||||    
T  37182165 tcttctaatgacaagggagaatctacaagtt-ttttttcctagggggtaagccaaaagacgcccatatagcagggggtaaaag 37182084  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 121
Target Start/End: Original strand, 21749247 - 21749283
Alignment:
Q  85 tcttctaatgacaagggggaatctccaagttattttt 121  Q
    |||||||||| |||||||||||||||||||| |||||    
T  21749247 tcttctaatggcaagggggaatctccaagtttttttt 21749283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 121
Target Start/End: Complemental strand, 35223223 - 35223191
Alignment:
Q  89 ctaatgacaagggggaatctccaagttattttt 121  Q
    ||||||||||||||||||||||||||| |||||    
T  35223223 ctaatgacaagggggaatctccaagtttttttt 35223191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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