View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12417_high_2 (Length: 397)

Name: NF12417_high_2
Description: NF12417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12417_high_2
NF12417_high_2
[»] chr3 (4 HSPs)
chr3 (187-305)||(18192395-18192513)
chr3 (334-397)||(18192296-18192359)
chr3 (12-99)||(25393961-25394048)
chr3 (191-253)||(49952919-49952981)
[»] chr2 (6 HSPs)
chr2 (224-305)||(18901302-18901383)
chr2 (334-397)||(18901217-18901280)
chr2 (189-262)||(19404673-19404746)
chr2 (188-259)||(44553230-44553301)
chr2 (189-259)||(11590774-11590844)
chr2 (194-234)||(109849-109888)
[»] chr1 (6 HSPs)
chr1 (224-305)||(45970692-45970773)
chr1 (334-397)||(45970593-45970656)
chr1 (195-235)||(31202201-31202241)
chr1 (191-235)||(32909728-32909772)
chr1 (191-239)||(51661540-51661588)
chr1 (191-222)||(31202912-31202943)
[»] chr8 (6 HSPs)
chr8 (334-397)||(11128287-11128350)
chr8 (223-293)||(11128142-11128212)
chr8 (260-305)||(11128206-11128251)
chr8 (195-234)||(27709330-27709369)
chr8 (197-239)||(22607550-22607592)
chr8 (199-234)||(35889213-35889248)
[»] scaffold0059 (1 HSPs)
scaffold0059 (226-297)||(20496-20567)
[»] chr7 (2 HSPs)
chr7 (188-225)||(32779845-32779882)
chr7 (191-224)||(24420069-24420102)
[»] scaffold0421 (1 HSPs)
scaffold0421 (195-271)||(7251-7326)
[»] chr6 (1 HSPs)
chr6 (191-259)||(19750135-19750203)
[»] chr4 (2 HSPs)
chr4 (191-239)||(3620474-3620522)
chr4 (187-259)||(16499888-16499960)


Alignment Details
Target: chr3 (Bit Score: 103; Significance: 4e-51; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 187 - 305
Target Start/End: Complemental strand, 18192513 - 18192395
Alignment:
Q  187 atatgaggaatgctagggtcacatcctctaacacactcctctaacacactccactcacaatttgccatgtcatccagttttttaacaccatgacttgcaa 286  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  18192513 atatgaggaatgctagggtcataccctctaacacactcctctaacacactccactcacaatttgccatgtcatccagttttttaacaccttgacttgcaa 18192414  T
Q  287 ccggtttccacaatccttc 305  Q
    ||||||||||| |||||||    
T  18192413 ccggtttccaccatccttc 18192395  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 334 - 397
Target Start/End: Complemental strand, 18192359 - 18192296
Alignment:
Q  334 atttaactaaaaaatagtaattaaagattttcatcttcctgcgcttcaacctcccatccagaac 397  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18192359 atttaattaaaaaatagtaattaaagattttcatcttcctgcgcttcaacctcccatccagaac 18192296  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 25394048 - 25393961
Alignment:
Q  12 atgagatttcactttcgttattctataaaaaataattatttctacaatttgggtagataattcttagaattcgggattactaaaatac 99  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| |   | | |||||||| ||||| | |||||||||||||    
T  25394048 atgagatttcactttcgttattctataaaaaataattatttctaaaattagctaaaacaattcttaaaattctgaattactaaaatac 25393961  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 253
Target Start/End: Original strand, 49952919 - 49952981
Alignment:
Q  191 gaggaatgctagggtcacatcctctaacacactcctctaacacactccactcacaatttgcca 253  Q
    |||||||| |||||||||||||| |||| ||||| || ||||||||||| | | |||||||||    
T  49952919 gaggaatgttagggtcacatcctttaacgcactcttccaacacactccaattataatttgcca 49952981  T

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Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 224 - 305
Target Start/End: Complemental strand, 18901383 - 18901302
Alignment:
Q  224 cctctaacacactccactcacaatttgccatgtcatccagttttttaacaccatgacttgcaaccggtttccacaatccttc 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  18901383 cctctaacacactccactcacaatttgccatgtcatccagttttttaacaccatgacttgcaaccggtttccaccatccttc 18901302  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 334 - 397
Target Start/End: Complemental strand, 18901280 - 18901217
Alignment:
Q  334 atttaactaaaaaatagtaattaaagattttcatcttcctgcgcttcaacctcccatccagaac 397  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18901280 atttaactaataaatagtaattaaagattttcatcttcctgcgcttcaacctcccatccagaac 18901217  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 262
Target Start/End: Complemental strand, 19404746 - 19404673
Alignment:
Q  189 atgaggaatgctagggtcacatcctctaacacactcctctaacacactccactcacaatttgccatgtcatcca 262  Q
    ||||| ||||||||||||||||  | ||||||||||| ||||||| || || ||| ||||||||||||||||||    
T  19404746 atgagaaatgctagggtcacattttttaacacactccactaacactcttcaatcataatttgccatgtcatcca 19404673  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 188 - 259
Target Start/End: Original strand, 44553230 - 44553301
Alignment:
Q  188 tatgaggaatgctagggtcacatcctctaacacactcctctaacacactccactcacaatttgccatgtcat 259  Q
    |||||||||||||| |||||||  ||||||||||||| | | |||||||||| ||| ||||| |||| ||||    
T  44553230 tatgaggaatgctatggtcacactctctaacacactcttttgacacactccaatcataatttaccatctcat 44553301  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 259
Target Start/End: Complemental strand, 11590844 - 11590774
Alignment:
Q  189 atgaggaatgctagggtcacatcctctaacacactcctctaacacactccactcacaatttgccatgtcat 259  Q
    ||||| ||||||| |||||||  ||||||||||||| | | |||||||||| ||| |||||||||| ||||    
T  11590844 atgagaaatgctatggtcacactctctaacacactcttttgacacactccaatcataatttgccatctcat 11590774  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 234
Target Start/End: Original strand, 109849 - 109888
Alignment:
Q  194 gaatgctagggtcacatcctctaacacactcctctaacaca 234  Q
    |||||||||||||||||| ||||| ||||||||||||||||    
T  109849 gaatgctagggtcacatc-tctaatacactcctctaacaca 109888  T

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Target: chr1 (Bit Score: 74; Significance: 8e-34; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 224 - 305
Target Start/End: Complemental strand, 45970773 - 45970692
Alignment:
Q  224 cctctaacacactccactcacaatttgccatgtcatccagttttttaacaccatgacttgcaaccggtttccacaatccttc 305  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  45970773 cctctagcacactccactcacaatttgccatgtcatccagttttttaacaccatgacttgcaaccggtttccaccatccttc 45970692  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 334 - 397
Target Start/End: Complemental strand, 45970656 - 45970593
Alignment:
Q  334 atttaactaaaaaatagtaattaaagattttcatcttcctgcgcttcaacctcccatccagaac 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45970656 atttaactaaaaaatagtaattaaagattttcatcttcctgcgcttcaacctcccatccagaac 45970593  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 31202201 - 31202241
Alignment:
Q  195 aatgctagggtcacatcctctaacacactcctctaacacac 235  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  31202201 aatgctagggtcacaccctctaacacactcctctaacacac 31202241  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 191 - 235
Target Start/End: Complemental strand, 32909772 - 32909728
Alignment:
Q  191 gaggaatgctagggtcacatcctctaacacactcctctaacacac 235  Q
    |||||||| |||||||||| |||||||||||||||||||||||||    
T  32909772 gaggaatgttagggtcacaccctctaacacactcctctaacacac 32909728  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 51661540 - 51661588
Alignment:
Q  191 gaggaatgctagggtcacatcctctaacacactcctctaacacactcca 239  Q
    ||||||||||||||||||| |||||||||| ||||| ||||||||||||    
T  51661540 gaggaatgctagggtcacaccctctaacactctcctataacacactcca 51661588  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 191 - 222
Target Start/End: Complemental strand, 31202943 - 31202912
Alignment:
Q  191 gaggaatgctagggtcacatcctctaacacac 222  Q
    ||||||||||||||||||||||||||||||||    
T  31202943 gaggaatgctagggtcacatcctctaacacac 31202912  T

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Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 334 - 397
Target Start/End: Original strand, 11128287 - 11128350
Alignment:
Q  334 atttaactaaaaaatagtaattaaagattttcatcttcctgcgcttcaacctcccatccagaac 397  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11128287 atttaattaaaaaatagtaattaaagattttcatcttcctgcgcttcaacctcccatccagaac 11128350  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 223 - 293
Target Start/End: Original strand, 11128142 - 11128212
Alignment:
Q  223 tcctctaacacactccactcacaatttgccatgtcatccagttttttaacaccatgacttgcaaccggttt 293  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  11128142 tcctctaacacactccactcgcaatttgccatgtcatccagttttttaacaccataacttgcaaccagttt 11128212  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 305
Target Start/End: Original strand, 11128206 - 11128251
Alignment:
Q  260 ccagttttttaacaccatgacttgcaaccggtttccacaatccttc 305  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||    
T  11128206 ccagttttttaacaccataacttgcaaccggtttccaccatccttc 11128251  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 195 - 234
Target Start/End: Original strand, 27709330 - 27709369
Alignment:
Q  195 aatgctagggtcacatcctctaacacactcctctaacaca 234  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  27709330 aatgctagggtcacaccctctaacacactcctctaacaca 27709369  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 239
Target Start/End: Original strand, 22607550 - 22607592
Alignment:
Q  197 tgctagggtcacatcctctaacacactcctctaacacactcca 239  Q
    ||||||||||||| |||||||||||||||||| ||||||||||    
T  22607550 tgctagggtcacaccctctaacacactcctcttacacactcca 22607592  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 199 - 234
Target Start/End: Original strand, 35889213 - 35889248
Alignment:
Q  199 ctagggtcacatcctctaacacactcctctaacaca 234  Q
    ||||||||||||||||||||||||||||| ||||||    
T  35889213 ctagggtcacatcctctaacacactcctccaacaca 35889248  T

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Target: scaffold0059 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 297
Target Start/End: Original strand, 20496 - 20567
Alignment:
Q  226 tctaacacactccactcacaatttgccatgtcatccagttttttaacaccatgacttgcaaccggtttccac 297  Q
    |||||||| | ||| |||||||||||||||||||||| |||||  ||||||||||||||  || ||||||||    
T  20496 tctaacactcaccaatcacaatttgccatgtcatccactttttctacaccatgacttgcctcctgtttccac 20567  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 188 - 225
Target Start/End: Complemental strand, 32779882 - 32779845
Alignment:
Q  188 tatgaggaatgctagggtcacatcctctaacacactcc 225  Q
    |||||||||||||||||||||| |||||||||||||||    
T  32779882 tatgaggaatgctagggtcacaccctctaacacactcc 32779845  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 224
Target Start/End: Original strand, 24420069 - 24420102
Alignment:
Q  191 gaggaatgctagggtcacatcctctaacacactc 224  Q
    ||||||||||||||||||| ||||||||||||||    
T  24420069 gaggaatgctagggtcacaccctctaacacactc 24420102  T

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Target: scaffold0421 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0421
Description:

Target: scaffold0421; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 271
Target Start/End: Complemental strand, 7326 - 7251
Alignment:
Q  195 aatgctagggtcacatcctctaacacactcctctaacacactccactcacaatttgccatgtcatccagttttttaa 271  Q
    |||||||||||||||||| ||||||| ||| | |||||||| ||| ||| ||||  |||||||||||| ||||||||    
T  7326 aatgctagggtcacatccactaacactctcttttaacacac-ccattcataattaaccatgtcatccacttttttaa 7251  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 259
Target Start/End: Complemental strand, 19750203 - 19750135
Alignment:
Q  191 gaggaatgctagggtcacatcctctaacacactcctctaacacactccactcacaatttgccatgtcat 259  Q
    ||||||||||| |||||||  ||||||||||||| | | |||||||||| ||| |||||||||| ||||    
T  19750203 gaggaatgctatggtcacactctctaacacactcttttgacacactccaatcataatttgccatctcat 19750135  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 3620474 - 3620522
Alignment:
Q  191 gaggaatgctagggtcacatcctctaacacactcctctaacacactcca 239  Q
    |||||||| |||||||| |||||||||||||| ||| ||||||||||||    
T  3620474 gaggaatgttagggtcatatcctctaacacacccctttaacacactcca 3620522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 16499960 - 16499888
Alignment:
Q  187 atatgaggaatgctagggtcacatcctctaacacactcctctaacacactccactcacaatttgccatgtcat 259  Q
    ||||||| ||||||| ||||| | | | |||||||||||| |||||||||||| | | ||||||||| |||||    
T  16499960 atatgagaaatgctatggtcaaaccttttaacacactcctataacacactccaattataatttgccacgtcat 16499888  T

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