View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12417_high_3 (Length: 361)

Name: NF12417_high_3
Description: NF12417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12417_high_3
NF12417_high_3
[»] chr3 (26 HSPs)
chr3 (16-361)||(5297817-5298162)
chr3 (169-332)||(13271170-13271333)
chr3 (58-332)||(6591970-6592247)
chr3 (169-332)||(6899337-6899500)
chr3 (169-331)||(6258451-6258613)
chr3 (169-332)||(6141535-6141698)
chr3 (169-272)||(6244542-6244645)
chr3 (58-140)||(6916236-6916318)
chr3 (58-272)||(7749137-7749354)
chr3 (21-122)||(6839750-6839851)
chr3 (53-122)||(8569800-8569869)
chr3 (58-142)||(6899223-6899307)
chr3 (230-353)||(4389546-4389669)
chr3 (185-272)||(5279915-5280002)
chr3 (169-272)||(6264934-6265037)
chr3 (21-120)||(6795465-6795564)
chr3 (53-272)||(5262907-5263125)
chr3 (230-333)||(5267356-5267459)
chr3 (58-117)||(6722914-6722973)
chr3 (221-272)||(6916402-6916453)
chr3 (58-124)||(6881651-6881717)
chr3 (219-264)||(6946564-6946609)
chr3 (110-198)||(5249349-5249437)
chr3 (58-122)||(6141421-6141485)
chr3 (58-122)||(6264820-6264884)
chr3 (296-332)||(6722696-6722732)
[»] scaffold1643 (1 HSPs)
scaffold1643 (21-120)||(1250-1349)
[»] chr1 (1 HSPs)
chr1 (169-331)||(35140989-35141150)
[»] scaffold0958 (1 HSPs)
scaffold0958 (58-122)||(710-774)


Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 16 - 361
Target Start/End: Original strand, 5297817 - 5298162
Alignment:
Q  16 atcagtcagcgtttgaagatggtgtaatcttcctatatgctctggcatcttctttatatgagtgccttttaggataagatggcgtaaactgacgagtttg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5297817 atcagtcagcgtttgaagatggtgtaatcttcctatatgctctggcatcttctttatatgagtgccttttaggataagatggcgtaaactgacgagtttg 5297916  T
Q  116 taaaaatctaaaggaaactcagtcagtggacaatgaatcaatatcaatgtttccaaattatacagcgtgcaaatggaatcaggtaagcttgttagcccgg 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  5297917 taaaaatctaaaggaaactcagtcagtggacaatgaatcaatatcaatgtttccaaattatacaacgtgcagatggaatcaggtaagcttgttagcccgg 5298016  T
Q  216 ttcgagaaagatcaagataacgcagaagctttaagttgcttatctcatcggctagcttcttgagattacaaaatctcaaggacaacatccgtaaatattt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5298017 ttcgagaaagatcaagataacgcagaagctttaagttgcttatctcatcggctagcttcttgagattacaaaatctcaacgacaacatccgtaaatattt 5298116  T
Q  316 tagtcttgaaaacaaatcatattgtactgtgttgcataccctgaag 361  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||    
T  5298117 tagtcttgaaagcaaatcatattgtactgtgttgcataccctgaag 5298162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 169 - 332
Target Start/End: Complemental strand, 13271333 - 13271170
Alignment:
Q  169 caaattatacagcgtgcaaatggaatcaggtaagcttgttagcccggttcgagaaagatcaagataacgcagaagctttaagttgcttatctcatcggct 268  Q
    ||||||||||| | | ||||||||||||||||||||||| | | ||||   |||||| || ||||| ||||||||||||||||| ||||||||||| |||    
T  13271333 caaattatacaacatacaaatggaatcaggtaagcttgtaatctcggtgtaagaaaggtctagatagcgcagaagctttaagtttcttatctcatcagct 13271234  T
Q  269 agcttcttgagattacaaaatctcaaggacaacatccgtaaatattttagtcttgaaaacaaat 332  Q
    ||||    |||||| |||  | | || || |||||||||||||||| |||||||||| ||||||    
T  13271233 agctctgagagattgcaacctttgaaagataacatccgtaaatattgtagtcttgaatacaaat 13271170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 58 - 332
Target Start/End: Complemental strand, 6592247 - 6591970
Alignment:
Q  58 tggcatcttctttatatgagtgccttttaggataagatggcgtaaactgacgagtttgtaaaaatctaaaggaaactcagtcagt---ggacaatgaatc 154  Q
    |||||||||||| |||||||||||||| ||  |||||||||| ||| ||| |||||||| ||||||| |||| |  || |||| |     ||| |    |    
T  6592247 tggcatcttcttaatatgagtgcctttcagattaagatggcgcaaattgatgagtttgtgaaaatctgaagggagttcggtcaatttaaaacattcttcc 6592148  T
Q  155 aatatcaatgtttccaaattatacagcgtgcaaatggaatcaggtaagcttgttagcccggttcgagaaagatcaagataacgcagaagctttaagttgc 254  Q
    ||||  ||||||| ||||||||||||||| |||||||||| |||||||||||  | | | |||  |||||| || ||||| |||||||||||||| || |    
T  6592147 aataagaatgtttgcaaattatacagcgtacaaatggaattaggtaagcttgcaatctcagttttagaaaggtctagatagcgcagaagctttaaatttc 6592048  T
Q  255 ttatctcatcggctagcttcttgagattacaaaatctcaaggacaacatccgtaaatattttagtcttgaaaacaaat 332  Q
    ||||||||||  |||||||   |||||| |||      | |||||||||||| |||||||||| ||||||||||||||    
T  6592047 ttatctcatcatctagctttacgagattgcaaccagaaagggacaacatccgcaaatattttattcttgaaaacaaat 6591970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 169 - 332
Target Start/End: Original strand, 6899337 - 6899500
Alignment:
Q  169 caaattatacagcgtgcaaatggaatcaggtaagcttgttagcccggttcgagaaagatcaagataacgcagaagctttaagttgcttatctcatcggct 268  Q
    ||||||||||||| | ||||||||||||||||||||||  | | ||||   |||||| || ||||| |||||||||||||| || ||||||||||| |||    
T  6899337 caaattatacagcatacaaatggaatcaggtaagcttgcaatctcggtgtaagaaaggtctagatagcgcagaagctttaaatttcttatctcatcagct 6899436  T
Q  269 agcttcttgagattacaaaatctcaaggacaacatccgtaaatattttagtcttgaaaacaaat 332  Q
    ||||   ||||||| |||      || ||||||| ||| |||||||||| ||||||||||||||    
T  6899437 agctctatgagattgcaaccagagaaagacaacacccgcaaatattttactcttgaaaacaaat 6899500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 169 - 331
Target Start/End: Original strand, 6258451 - 6258613
Alignment:
Q  169 caaattatacagcgtgcaaatggaatcaggtaagcttgttagcccggttcgagaaagatcaagataacgcagaagctttaagttgcttatctcatcggct 268  Q
    ||||||||||| | | ||||||||||||||||| ||||| | | ||||   |||||| || ||||| ||||||||||||||||| ||||||||||| |||    
T  6258451 caaattatacaacatacaaatggaatcaggtaaacttgtaatctcggtgtaagaaaggtctagatagcgcagaagctttaagtttcttatctcatcagct 6258550  T
Q  269 agcttcttgagattacaaaatctcaaggacaacatccgtaaatattttagtcttgaaaacaaa 331  Q
    ||||    |||||| |||      || ||||| ||||| ||||||||||||||||||||||||    
T  6258551 agctctaagagattgcaaccagagaaagacaatatccgcaaatattttagtcttgaaaacaaa 6258613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 169 - 332
Target Start/End: Original strand, 6141535 - 6141698
Alignment:
Q  169 caaattatacagcgtgcaaatggaatcaggtaagcttgttagcccggttcgagaaagatcaagataacgcagaagctttaagttgcttatctcatcggct 268  Q
    ||||||||||||| | |||||||||| |||||||||||| | | | ||   |||||| || ||||| |||||||||||||| || ||||||||||| |||    
T  6141535 caaattatacagcttacaaatggaattaggtaagcttgtaatctccgtgtaagaaaggtctagatagcgcagaagctttaaatttcttatctcatcagct 6141634  T
Q  269 agcttcttgagattacaaaatctcaaggacaacatccgtaaatattttagtcttgaaaacaaat 332  Q
    ||||    |||||| |||    | || ||||||||||| ||||||||||||||  |||||||||    
T  6141635 agctctaagagattgcaaccattgaaagacaacatccgcaaatattttagtctaaaaaacaaat 6141698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 169 - 272
Target Start/End: Original strand, 6244542 - 6244645
Alignment:
Q  169 caaattatacagcgtgcaaatggaatcaggtaagcttgttagcccggttcgagaaagatcaagataacgcagaagctttaagttgcttatctcatcggct 268  Q
    ||||||||||| | | |||||||||| |||||||||||| | | ||||   |||||| || ||||| ||||||||||||||||| ||||||||||| |||    
T  6244542 caaattatacaacatacaaatggaattaggtaagcttgtaatctcggtgtaagaaaggtctagatagcgcagaagctttaagtttcttatctcatcagct 6244641  T
Q  269 agct 272  Q
    ||||    
T  6244642 agct 6244645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 140
Target Start/End: Original strand, 6916236 - 6916318
Alignment:
Q  58 tggcatcttctttatatgagtgccttttaggataagatggcgtaaactgacgagtttgtaaaaatctaaaggaaactcagtca 140  Q
    |||||||||||| |||||||||||||| ||  |||||||||||||  |||||||||||  |||||||||||| | ||||||||    
T  6916236 tggcatcttcttaatatgagtgcctttcagattaagatggcgtaagttgacgagtttgccaaaatctaaagggagctcagtca 6916318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 272
Target Start/End: Original strand, 7749137 - 7749354
Alignment:
Q  58 tggcatcttctttatatgagtgccttttaggataagatggcgtaaactgacgagtttgtaaaaatctaaaggaaactcagtcagt---ggacaatgaatc 154  Q
    |||||||||||| ||||||||||| |||||  ||||||| |||||| ||| ||||||| |||||||| |||| | ||||| || |     ||| ||   |    
T  7749137 tggcatcttcttaatatgagtgccgtttagattaagatgacgtaaattgatgagtttgcaaaaatctgaaggcagctcagccaatctgaaacattgttcc 7749236  T
Q  155 aatatcaatgtttccaaattatacagcgtgcaaatggaatcaggtaagcttgttagcccggttcgagaaagatcaagataacgcagaagctttaagttgc 254  Q
    || |  | ||| | ||||||||||||| | ||||||||||  ||||||||||  | | | ||  ||||||| || ||||| |||||||||||||| || |    
T  7749237 aacaagagtgtctgcaaattatacagcatacaaatggaattgggtaagcttgcaatctcagtgtgagaaaggtctagatagcgcagaagctttaaatttc 7749336  T
Q  255 ttatctcatcggctagct 272  Q
    ||||||||||||||||||    
T  7749337 ttatctcatcggctagct 7749354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 6839851 - 6839750
Alignment:
Q  21 tcagcgtttgaagatggtgtaatcttcctatatgctctggcatcttctttatatgagtgccttttaggataagatggcgtaaactgacgagtttgtaaaa 120  Q
    |||| ||||||||||||| ||  || ||||| | || ||||||||||||||||| |  |||||  ||  ||||||||||||||||||| |||||||||||    
T  6839851 tcagtgtttgaagatggtttagcctccctatcttctttggcatcttctttatattacagccttcaagattaagatggcgtaaactgactagtttgtaaaa 6839752  T
Q  121 at 122  Q
    ||    
T  6839751 at 6839750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 122
Target Start/End: Complemental strand, 8569869 - 8569800
Alignment:
Q  53 tgctctggcatcttctttatatgagtgccttttaggataagatggcgtaaactgacgagtttgtaaaaat 122  Q
    |||| |||||||||||| |||| ||||||||||||  |||||||||||||| || | |||||||||||||    
T  8569869 tgctttggcatcttcttaatatcagtgccttttagattaagatggcgtaaattggcaagtttgtaaaaat 8569800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 58 - 142
Target Start/End: Original strand, 6899223 - 6899307
Alignment:
Q  58 tggcatcttctttatatgagtgccttttaggataagatggcgtaaactgacgagtttgtaaaaatctaaaggaaactcagtcagt 142  Q
    |||||||||| |||||||||||||||  ||  ||||||| |||| | ||||||||||| |||||||| |||| | ||||||||||    
T  6899223 tggcatcttcattatatgagtgccttgcagattaagatgacgtagattgacgagtttgcaaaaatctgaagggagctcagtcagt 6899307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 353
Target Start/End: Complemental strand, 4389669 - 4389546
Alignment:
Q  230 agataacgcagaagctttaagttgcttatctcatcggctagcttcttgagattacaaaatctcaaggacaacatccgtaaatattttagtcttgaaaaca 329  Q
    |||||||||| ||||||||| |||||||||| |||  ||| ||| |  || ||||||  | |||| || |||||||| ||| |||||||  |||||||||    
T  4389669 agataacgcataagctttaaattgcttatcttatcatctaacttttgaaggttacaacgtttcaatgataacatccgcaaacattttagctttgaaaaca 4389570  T
Q  330 aatcatattgtactgtgttgcata 353  Q
    |||| | ||||| |||||||||||    
T  4389569 aatcttgttgtattgtgttgcata 4389546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 272
Target Start/End: Original strand, 5279915 - 5280002
Alignment:
Q  185 caaatggaatcaggtaagcttgttagcccggttcgagaaagatcaagataacgcagaagctttaagttgcttatctcatcggctagct 272  Q
    |||||||||||||||| |||||| |  || ||   |||||| || ||||||| |||||||||||||||||||||||| || |||||||    
T  5279915 caaatggaatcaggtaggcttgtaattccagtgtaagaaaggtctagataacacagaagctttaagttgcttatctcgtcagctagct 5280002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 272
Target Start/End: Original strand, 6264934 - 6265037
Alignment:
Q  169 caaattatacagcgtgcaaatggaatcaggtaagcttgttagcccggttcgagaaagatcaagataacgcagaagctttaagttgcttatctcatcggct 268  Q
    |||| |||||||| | |||||||||| |||||||||||| | | | ||   |||||| || ||||| |||||||||||||| || ||||||||||| |||    
T  6264934 caaactatacagcttacaaatggaattaggtaagcttgtaatctctgtgtaagaaaggtctagatagcgcagaagctttaaatttcttatctcatcagct 6265033  T
Q  269 agct 272  Q
    ||||    
T  6265034 agct 6265037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 6795564 - 6795465
Alignment:
Q  21 tcagcgtttgaagatggtgtaatcttcctatatgctctggcatcttctttatatgagtgccttttaggataagatggcgtaaactgacgagtttgtaaaa 120  Q
    |||| ||||||||||||| ||  || || || |||| |||||| ||||||||||||  |||||| ||  |||||||||||||||| || |||||||||||    
T  6795564 tcagtgtttgaagatggtttagactccccatctgctttggcattttctttatatgacagcctttaagattaagatggcgtaaactaacaagtttgtaaaa 6795465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 272
Target Start/End: Original strand, 5262907 - 5263125
Alignment:
Q  53 tgctctggcatcttctttatatgagtgccttttaggataagatggcgtaaactgacgagtttgtaaaaatctaaaggaaactcagtcagtggacaatgaa 152  Q
    |||| ||||||||||   ||| |||||| || |||  |||||||||||||| |||||||||| ||||||||| |||| | ||| |||| |  |||    |    
T  5262907 tgctttggcatcttcgagataagagtgctttctagattaagatggcgtaaattgacgagtttataaaaatctgaagggagctccgtcaatttacatccta 5263006  T
Q  153 tcaatatcaatgtttccaaattatacagcgtgcaaatggaatcaggtaagcttgttagcccggttcgagaaagatcaagataacgcagaagctttaagtt 252  Q
     |||||  | ||| | ||||||||||| |    ||||||||||||||| |||||| | ||| ||   |||||| || ||||||||||||||| |||||||    
T  5263007 gcaataagagtgtctgcaaattatacaacacataaatggaatcaggtaggcttgtaatcccagtgtaagaaaggtctagataacgcagaagc-ttaagtt 5263105  T
Q  253 gcttatctcatcggctagct 272  Q
    ||| ||||| || |||||||    
T  5263106 gctgatctcgtcagctagct 5263125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 333
Target Start/End: Original strand, 5267356 - 5267459
Alignment:
Q  230 agataacgcagaagctttaagttgcttatctcatcggctagcttcttgagattacaaaatctcaaggacaacatccgtaaatattttagtcttgaaaaca 329  Q
    |||||||||| ||||||||| ||||||||||||||  ||| ||| |  || ||||||  | |||| || |||||||| ||| |||||||  |||||||||    
T  5267356 agataacgcaaaagctttaaattgcttatctcatcatctaacttttgaaggttacaacgtttcaatgataacatccgcaaacattttagctttgaaaaca 5267455  T
Q  330 aatc 333  Q
    ||||    
T  5267456 aatc 5267459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 117
Target Start/End: Complemental strand, 6722973 - 6722914
Alignment:
Q  58 tggcatcttctttatatgagtgccttttaggataagatggcgtaaactgacgagtttgta 117  Q
    |||||||||||| |||||||||||||| ||  ||||||  |||||| |||||||||||||    
T  6722973 tggcatcttcttaatatgagtgcctttcagattaagataacgtaaattgacgagtttgta 6722914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 221 - 272
Target Start/End: Original strand, 6916402 - 6916453
Alignment:
Q  221 gaaagatcaagataacgcagaagctttaagttgcttatctcatcggctagct 272  Q
    |||||||| ||||| |||||||||||||| || ||||||||||| |||||||    
T  6916402 gaaagatctagatagcgcagaagctttaaatttcttatctcatctgctagct 6916453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 124
Target Start/End: Original strand, 6881651 - 6881717
Alignment:
Q  58 tggcatcttctttatatgagtgccttttaggataagatggcgtaaactgacgagtttgtaaaaatct 124  Q
    |||||||||||| |||||||||||| | ||  ||||||| |||||||||| ||| ||| ||||||||    
T  6881651 tggcatcttcttaatatgagtgcctgtcagattaagatgacgtaaactgatgagcttgcaaaaatct 6881717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 264
Target Start/End: Original strand, 6946564 - 6946609
Alignment:
Q  219 gagaaagatcaagataacgcagaagctttaagttgcttatctcatc 264  Q
    ||||||| || |||||||||| ||||||||| ||||||||||||||    
T  6946564 gagaaaggtctagataacgcaaaagctttaaattgcttatctcatc 6946609  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 198
Target Start/End: Original strand, 5249349 - 5249437
Alignment:
Q  110 agtttgtaaaaatctaaaggaaactcagtcagtggacaatgaatcaatatcaatgtttccaaattatacagcgtgcaaatggaatcagg 198  Q
    ||||||||||||||| |||| | |||||||| ||||||||   |||||| || |||||  |||||||| ||  | ||||||||||||||    
T  5249349 agtttgtaaaaatctgaagggagctcagtcaatggacaatttttcaatagcagtgtttgtaaattatataggttacaaatggaatcagg 5249437  T

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Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 122
Target Start/End: Original strand, 6141421 - 6141485
Alignment:
Q  58 tggcatcttctttatatgagtgccttttaggataagatggcgtaaactgacgagtttgtaaaaat 122  Q
    |||||||||||| ||||| |||||||| |   ||||||| |||||| ||||||||||| ||||||    
T  6141421 tggcatcttcttaatatgtgtgcctttcaaattaagatgacgtaaattgacgagtttgcaaaaat 6141485  T

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Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 122
Target Start/End: Original strand, 6264820 - 6264884
Alignment:
Q  58 tggcatcttctttatatgagtgccttttaggataagatggcgtaaactgacgagtttgtaaaaat 122  Q
    |||||||||||| ||||| |||||||| |   ||||||| |||||| ||||||||||| ||||||    
T  6264820 tggcatcttcttaatatgtgtgcctttcaaattaagatgacgtaaattgacgagtttgcaaaaat 6264884  T

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Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 332
Target Start/End: Complemental strand, 6722732 - 6722696
Alignment:
Q  296 gacaacatccgtaaatattttagtcttgaaaacaaat 332  Q
    |||| |||||| |||||||||||||||||||||||||    
T  6722732 gacagcatccgcaaatattttagtcttgaaaacaaat 6722696  T

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Target: scaffold1643 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1643
Description:

Target: scaffold1643; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 1250 - 1349
Alignment:
Q  21 tcagcgtttgaagatggtgtaatcttcctatatgctctggcatcttctttatatgagtgccttttaggataagatggcgtaaactgacgagtttgtaaaa 120  Q
    |||| ||||||||||||| ||  || ||||| |||| |||||| |||||||||| |  |||||| ||  |||||||||||||||| || |||||||||||    
T  1250 tcagtgtttgaagatggtttagactccctatctgctttggcattttctttatattacagcctttaagattaagatggcgtaaactcacaagtttgtaaaa 1349  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 331
Target Start/End: Complemental strand, 35141150 - 35140989
Alignment:
Q  169 caaattatacagcgtgcaaatggaatcaggtaagcttgttagcccggttcgagaaagatcaagataacgcagaagctttaagttgcttatctcatcggct 268  Q
    ||||||||||| | | |||||||||| |||||||||||| | | ||||   |||||| || ||||| |||| |||||||||||| | |||||| || |||    
T  35141150 caaattatacaacatacaaatggaattaggtaagcttgtaatctcggtgtaagaaaggtctagatagcgcataagctttaagtttcctatctcttcagct 35141051  T
Q  269 agcttcttgagattacaaaatctcaaggacaacatccgtaaatattttagtcttgaaaacaaa 331  Q
    ||||    |||||| ||| |    || ||||||||||| ||||| ||||||||||||||||||    
T  35141050 agctctgagagattgcaacaagagaaagacaacatccgcaaata-tttagtcttgaaaacaaa 35140989  T

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Target: scaffold0958 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0958
Description:

Target: scaffold0958; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 122
Target Start/End: Complemental strand, 774 - 710
Alignment:
Q  58 tggcatcttctttatatgagtgccttttaggataagatggcgtaaactgacgagtttgtaaaaat 122  Q
    |||||||||||| |||| | ||||||||||  ||||||| |||||||||   |||||||||||||    
T  774 tggcatcttcttaatatcattgccttttagattaagatgacgtaaactggaaagtttgtaaaaat 710  T

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