View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12417_high_5 (Length: 305)

Name: NF12417_high_5
Description: NF12417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12417_high_5
NF12417_high_5
[»] chr6 (15 HSPs)
chr6 (10-251)||(32044797-32045037)
chr6 (10-69)||(7423485-7423544)
chr6 (10-69)||(4507828-4507887)
chr6 (19-69)||(2540039-2540089)
chr6 (10-59)||(17264996-17265045)
chr6 (10-69)||(13096741-13096800)
chr6 (10-68)||(7416360-7416418)
chr6 (10-59)||(2812772-2812821)
chr6 (10-56)||(5639678-5639724)
chr6 (10-55)||(1945114-1945159)
chr6 (10-59)||(3716827-3716876)
chr6 (10-59)||(5700180-5700229)
chr6 (270-299)||(32045056-32045085)
chr6 (10-69)||(9905638-9905698)
chr6 (11-74)||(29519859-29519923)
[»] chr4 (24 HSPs)
chr4 (10-100)||(27631861-27631951)
chr4 (10-74)||(34973444-34973508)
chr4 (10-100)||(6228309-6228399)
chr4 (10-100)||(41412708-41412798)
chr4 (24-100)||(23524382-23524458)
chr4 (10-69)||(17932662-17932721)
chr4 (12-74)||(32442400-32442462)
chr4 (10-59)||(48318618-48318667)
chr4 (10-69)||(7932188-7932247)
chr4 (10-69)||(25490907-25490966)
chr4 (10-69)||(31581973-31582032)
chr4 (10-59)||(47874302-47874351)
chr4 (10-69)||(29823168-29823227)
chr4 (10-69)||(55052211-55052270)
chr4 (10-59)||(8106965-8107014)
chr4 (10-59)||(54631025-54631074)
chr4 (10-69)||(2505553-2505612)
chr4 (10-69)||(25751972-25752031)
chr4 (10-69)||(40704516-40704575)
chr4 (109-152)||(49397659-49397702)
chr4 (10-59)||(27741686-27741735)
chr4 (10-59)||(38536764-38536813)
chr4 (10-59)||(46439818-46439867)
chr4 (10-59)||(53893553-53893602)
[»] chr7 (20 HSPs)
chr7 (10-152)||(31643622-31643764)
chr7 (10-100)||(47203062-47203152)
chr7 (10-74)||(18951385-18951449)
chr7 (10-154)||(8155473-8155616)
chr7 (10-59)||(9152360-9152409)
chr7 (10-74)||(3304265-3304329)
chr7 (10-82)||(24041701-24041773)
chr7 (13-69)||(42864626-42864682)
chr7 (19-74)||(33573571-33573626)
chr7 (10-69)||(37517787-37517846)
chr7 (10-69)||(42925162-42925221)
chr7 (10-59)||(19818952-19819001)
chr7 (10-59)||(36468083-36468132)
chr7 (10-58)||(19225133-19225181)
chr7 (10-69)||(36629781-36629840)
chr7 (10-59)||(3936560-3936609)
chr7 (10-59)||(6467837-6467886)
chr7 (10-59)||(43737666-43737715)
chr7 (10-52)||(24689877-24689919)
chr7 (10-58)||(36408931-36408979)
[»] chr3 (22 HSPs)
chr3 (10-100)||(2358107-2358197)
chr3 (10-100)||(3938762-3938852)
chr3 (10-100)||(47302579-47302669)
chr3 (10-151)||(8657700-8657840)
chr3 (10-59)||(50716826-50716875)
chr3 (10-59)||(50795972-50796021)
chr3 (10-69)||(3351585-3351644)
chr3 (10-69)||(39150357-39150416)
chr3 (10-69)||(46622327-46622386)
chr3 (10-69)||(47130916-47130975)
chr3 (10-59)||(3902342-3902391)
chr3 (10-59)||(41301479-41301528)
chr3 (10-59)||(52777793-52777842)
chr3 (10-58)||(500714-500762)
chr3 (10-69)||(26053262-26053321)
chr3 (10-69)||(38977272-38977331)
chr3 (10-69)||(49095734-49095793)
chr3 (10-59)||(35142653-35142702)
chr3 (10-59)||(47739471-47739520)
chr3 (12-69)||(54588269-54588326)
chr3 (13-69)||(33439756-33439812)
chr3 (10-69)||(41485818-41485878)
[»] chr1 (24 HSPs)
chr1 (10-152)||(32542789-32542931)
chr1 (21-100)||(49786868-49786947)
chr1 (10-74)||(44937809-44937873)
chr1 (10-74)||(23443308-23443372)
chr1 (10-69)||(7011790-7011849)
chr1 (10-69)||(17000888-17000947)
chr1 (10-59)||(32817341-32817390)
chr1 (10-99)||(33610896-33610985)
chr1 (10-69)||(34162313-34162372)
chr1 (19-69)||(28866175-28866225)
chr1 (10-59)||(41584133-41584182)
chr1 (14-59)||(49678026-49678071)
chr1 (10-59)||(52744390-52744439)
chr1 (10-69)||(40650229-40650288)
chr1 (10-69)||(40907454-40907513)
chr1 (10-59)||(38885790-38885839)
chr1 (10-59)||(45567436-45567485)
chr1 (11-59)||(15069447-15069495)
chr1 (11-69)||(667236-667295)
chr1 (10-59)||(45046397-45046446)
chr1 (10-69)||(42546507-42546565)
chr1 (10-48)||(18583090-18583128)
chr1 (10-52)||(34006842-34006884)
chr1 (10-58)||(4615458-4615506)
[»] chr2 (16 HSPs)
chr2 (10-100)||(36948613-36948703)
chr2 (10-59)||(33451990-33452039)
chr2 (10-59)||(41509961-41510010)
chr2 (10-59)||(44465282-44465331)
chr2 (10-69)||(16749966-16750025)
chr2 (10-69)||(39447724-39447783)
chr2 (10-59)||(25217304-25217353)
chr2 (10-59)||(41854428-41854477)
chr2 (19-59)||(15994676-15994716)
chr2 (10-82)||(45153410-45153482)
chr2 (10-69)||(17474313-17474372)
chr2 (10-69)||(32187402-32187461)
chr2 (10-52)||(38308380-38308422)
chr2 (10-59)||(8450872-8450921)
chr2 (10-69)||(4268139-4268198)
chr2 (10-45)||(42894954-42894989)
[»] chr5 (23 HSPs)
chr5 (10-98)||(38030754-38030842)
chr5 (10-155)||(26189755-26189899)
chr5 (10-69)||(20892151-20892210)
chr5 (10-69)||(33488149-33488208)
chr5 (10-69)||(37183311-37183370)
chr5 (10-100)||(12464598-12464688)
chr5 (10-59)||(31220872-31220921)
chr5 (10-69)||(4064319-4064378)
chr5 (10-69)||(6157677-6157736)
chr5 (10-69)||(6157902-6157961)
chr5 (10-69)||(15799771-15799830)
chr5 (10-69)||(31928649-31928708)
chr5 (19-69)||(14112264-14112314)
chr5 (11-69)||(38872197-38872255)
chr5 (10-59)||(38692327-38692376)
chr5 (10-69)||(29863098-29863157)
chr5 (10-59)||(24203256-24203305)
chr5 (10-69)||(38372845-38372904)
chr5 (10-52)||(32841515-32841557)
chr5 (14-59)||(40619521-40619566)
chr5 (21-55)||(39525305-39525339)
chr5 (19-59)||(15958301-15958341)
chr5 (10-50)||(26898339-26898379)
[»] chr8 (16 HSPs)
chr8 (19-100)||(31519380-31519461)
chr8 (10-74)||(21004894-21004958)
chr8 (10-69)||(3095266-3095325)
chr8 (10-69)||(8884975-8885034)
chr8 (10-69)||(9074106-9074165)
chr8 (10-59)||(44106792-44106841)
chr8 (10-69)||(11697842-11697901)
chr8 (10-59)||(34854277-34854326)
chr8 (10-57)||(42280436-42280483)
chr8 (11-69)||(14163573-14163631)
chr8 (10-59)||(11698647-11698696)
chr8 (10-59)||(27927485-27927534)
chr8 (12-69)||(34853895-34853952)
chr8 (10-59)||(40995235-40995284)
chr8 (10-59)||(28917356-28917405)
chr8 (10-52)||(21594357-21594399)
[»] scaffold0027 (1 HSPs)
scaffold0027 (11-59)||(141530-141578)
[»] scaffold0018 (1 HSPs)
scaffold0018 (10-69)||(173885-173944)
[»] scaffold0010 (1 HSPs)
scaffold0010 (21-69)||(141059-141107)
[»] scaffold0137 (1 HSPs)
scaffold0137 (10-69)||(9026-9085)
[»] scaffold0770 (1 HSPs)
scaffold0770 (10-59)||(4364-4413)
[»] scaffold0029 (1 HSPs)
scaffold0029 (10-59)||(102668-102717)
[»] scaffold0508 (1 HSPs)
scaffold0508 (10-82)||(2897-2969)


Alignment Details
Target: chr6 (Bit Score: 138; Significance: 4e-72; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 10 - 251
Target Start/End: Original strand, 32044797 - 32045037
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggattatgaagtctggaaatctcaagaacatttttgnnnnnnnnc 109  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| || | ||| ||||||  ||||||||             
T  32044797 gattatacataagaattgtccggattataaaatccgaaatagtaaacatgattccagattatgaaatccgaaaacctcaagggcatttttgaaaaaaat- 32044895  T
Q  110 gcagagcacgcgagaatcctataggatggaataagtaatactcattgcatatttatgtcatgcaaccaccattggtccaagtctatttctagaaaaacta 209  Q
    |||| ||  |||||||||||||||| |||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32044896 gcagggcgggcgagaatcctatagggtggggaaagtaatactcattgcatatttatgtcatgcaaccaccattggtccaagtctatttctagaaaaacta 32044995  T
Q  210 aacacccaattttcgatatagatattaatttatttagataag 251  Q
    |||||||||||||||||||||||||||| | |||||||||||    
T  32044996 aacacccaattttcgatatagatattaagtcatttagataag 32045037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 7423485 - 7423544
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  7423485 gattatacataagaattgtccggattataaaatccgaaatagtaaacatgaatccggatt 7423544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 4507887 - 4507828
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||||  ||||||||    
T  4507887 gattatacataagaattgtccggattataaaattcgaaatagtaaacatgaatccggatt 4507828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 2540039 - 2540089
Alignment:
Q  19 taagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  2540039 taagaattgtccggattataaaatccgaaatagtaaacatgaatccggatt 2540089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 17264996 - 17265045
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  17264996 gattatacataagaattgtccggattataaaatccgaaatattaaacatg 17265045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 13096741 - 13096800
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||||||| |||||||| |||||||||||||||| |||||||||||||||  ||||||||    
T  13096741 gattatacataagaattatccggattataaaatctgaaatagtaaacatgaatccggatt 13096800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 7416360 - 7416418
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggat 68  Q
    |||||||| ||| ||||||||||||||||||||| |||||||||||||||  |||||||    
T  7416360 gattatacataaaaattgtccggattataaaatctgaaatagtaaacatgaatccggat 7416418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 2812821 - 2812772
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    |||||||| |||||||||||||||| |||||||||| |||||||||||||    
T  2812821 gattatacataagaattgtccggataataaaatccgtaatagtaaacatg 2812772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 5639678 - 5639724
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaac 56  Q
    |||||||| ||| ||||||||| ||||||||||||||||||||||||    
T  5639678 gattatacataaaaattgtccgaattataaaatccgaaatagtaaac 5639724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 1945159 - 1945114
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaa 55  Q
    |||||||| |||||||| |||| |||||||||||||||||||||||    
T  1945159 gattatacataagaattttccgaattataaaatccgaaatagtaaa 1945114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 3716876 - 3716827
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    |||||||| ||||||||||||| |||||||||| ||||||| ||||||||    
T  3716876 gattatacataagaattgtccgaattataaaattcgaaataataaacatg 3716827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 5700180 - 5700229
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    |||| ||| ||||||||||||||| |||||||||| ||||| ||||||||    
T  5700180 gattgtacataagaattgtccggactataaaatccaaaataataaacatg 5700229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 299
Target Start/End: Original strand, 32045056 - 32045085
Alignment:
Q  270 caaaggcaaagttaactcattttgaatact 299  Q
    ||||||||||||||||||||||||||||||    
T  32045056 caaaggcaaagttaactcattttgaatact 32045085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 9905638 - 9905698
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagt-aaacatgcttccggatt 69  Q
    |||||||| |||||||||| ||||||||||||||  ||||||| |||||||  ||||||||    
T  9905638 gattatacataagaattgttcggattataaaatcgaaaatagtgaaacatgaatccggatt 9905698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 29519859 - 29519923
Alignment:
Q  11 attatacttaagaattgtccggattataaaatccgaaatagt-aaacatgcttccggattatgaa 74  Q
    ||||||| ||||||||||||||||| || |||||||| |||| |||||||  | |||||||||||    
T  29519859 attatacataagaattgtccggattttagaatccgaattagtgaaacatgaattcggattatgaa 29519923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 9e-30; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 10 - 100
Target Start/End: Complemental strand, 27631951 - 27631861
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggattatgaagtctggaaatctcaagaacatttttg 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||  ||||||||    
T  27631951 gattatacataagaattgtccggattataaaatccgaaatagtaaacatgattccggattatgaaatctggaaacctcaagggcatttttg 27631861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 34973444 - 34973508
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggattatgaa 74  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  34973444 gattatacataagaattgtccggattataaaatccgaaatagtaaacatgattccggattatgaa 34973508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 10 - 100
Target Start/End: Complemental strand, 6228399 - 6228309
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggattatgaagtctggaaatctcaagaacatttttg 100  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||||| ||  |||||||||| || ||||| ||||||  ||||||||    
T  6228399 gattatacataagaattgtccggattataaaatccgagatagtaaacatgattatggattatgaaatccggaaacctcaagggcatttttg 6228309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 10 - 100
Target Start/End: Complemental strand, 41412798 - 41412708
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggattatgaagtctggaaatctcaagaacatttttg 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| || | ||||||||| ||   ||| ||||||| ||||||||    
T  41412798 gattatacataagaattgtccggattataaaatccgaaatagtaaacatgatttcagattatgaaatccaaaaacctcaagagcatttttg 41412708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 23524382 - 23524458
Alignment:
Q  24 attgtccggattataaaatccgaaatagtaaacatgcttccggattatgaagtctggaaatctcaagaacatttttg 100  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||||| || |||||||| ||||||  ||||||||    
T  23524382 attgtccgaattataaaatccgaaatagtaaacatgattccggattataaaatctggaaacctcaagggcatttttg 23524458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 17932721 - 17932662
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  17932721 gattatacataagaattgtccggattataaaatccgaaatagtaaacatgaatccggatt 17932662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 32442400 - 32442462
Alignment:
Q  12 ttatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggattatgaa 74  Q
    |||||| |||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||    
T  32442400 ttatacataagaattgtccagattataaaattcgaaatagtaaacatgattccggattatgaa 32442462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 48318667 - 48318618
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  48318667 gattatacataagaattgtccggattataaaatccgaaatagtaaacatg 48318618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 7932188 - 7932247
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||  ||||||||    
T  7932188 gattatacataagaattgttcggattataaaatccgaaatagtaaacatgaatccggatt 7932247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 25490966 - 25490907
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||  ||||||||    
T  25490966 gattatacataagaattgttcggattataaaatccgaaatagtaaacatgaatccggatt 25490907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 31582032 - 31581973
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||||  ||||||||    
T  31582032 gattatacataagaattttccggattataaaatccgaaatagtaaacatgaatccggatt 31581973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 47874302 - 47874351
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  47874302 gattatacataagaattgtccggattataaaatccgaaataataaacatg 47874351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 29823168 - 29823227
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||||||| |||| ||||||||||||||||||||| ||||||||||||||  ||||||||    
T  29823168 gattatacataaggattgtccggattataaaatccaaaatagtaaacatgaatccggatt 29823227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 55052270 - 55052211
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||||||| |||||||| ||||||||||||||||| ||||||||||||||  ||||||||    
T  55052270 gattatacataagaattatccggattataaaatccaaaatagtaaacatgaatccggatt 55052211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 8106965 - 8107014
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    |||||||  |||||||||||| ||||||||||||||||||||||||||||    
T  8106965 gattataaataagaattgtccagattataaaatccgaaatagtaaacatg 8107014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 54631074 - 54631025
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    |||||||| |||||||| |||||||||||||||||| |||||||||||||    
T  54631074 gattatacataagaattctccggattataaaatccggaatagtaaacatg 54631025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 2505612 - 2505553
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||||||| |||||||| | |||||||||||||||||||||||||| |||  ||||||||    
T  2505612 gattatacataagaattattcggattataaaatccgaaatagtaaatatgaatccggatt 2505553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 25752031 - 25751972
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||||||| |||||||||| ||||||||||||||| |||| |||||||||  ||||||||    
T  25752031 gattatacataagaattgttcggattataaaatccaaaattgtaaacatgaatccggatt 25751972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 40704516 - 40704575
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||||||| ||||| ||| |||||||||||||||| ||||||||||||||  ||||||||    
T  40704516 gattatacataagagttgcccggattataaaatccaaaatagtaaacatgaatccggatt 40704575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 152
Target Start/End: Original strand, 49397659 - 49397702
Alignment:
Q  109 cgcagagcacgcgagaatcctataggatggaataagtaatactc 152  Q
    |||||||||||||||||||||||||||||| | |||||||||||    
T  49397659 cgcagagcacgcgagaatcctataggatgggaaaagtaatactc 49397702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 27741735 - 27741686
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    |||||||| ||| |||||||||| ||||||||||||||||||||| ||||    
T  27741735 gattatacataaaaattgtccgggttataaaatccgaaatagtaatcatg 27741686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 38536764 - 38536813
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    |||||||| |||||||| ||| ||||||||||||| ||||||||||||||    
T  38536764 gattatacataagaattatccagattataaaatccaaaatagtaaacatg 38536813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 46439867 - 46439818
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    |||||||| |||||||| |||||||||||||||  |||||||||||||||    
T  46439867 gattatacataagaattttccggattataaaatttgaaatagtaaacatg 46439818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 53893602 - 53893553
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    |||||||| |||||||| || ||||||||||||| |||||||||||||||    
T  53893602 gattatacataagaattttctggattataaaatctgaaatagtaaacatg 53893553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 152
Target Start/End: Original strand, 31643622 - 31643764
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggattatgaagtctggaaatctcaagaacatttttgnnnnnnnnc 109  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  | ||||| ||||||  ||||||||             
T  31643622 gattatacataagaattgtccggattataaaatccgaaatagtaaacatgattccggattatgaaagccggaaacctcaagggcatttttgaaaaaaaat 31643721  T
Q  110 gcagagcacgcgagaatcctataggatggaataagtaatactc 152  Q
    | || || || |||||||||||||||||||| |||||||||||    
T  31643722 ggagggcgcgtgagaatcctataggatggaaaaagtaatactc 31643764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 100
Target Start/End: Original strand, 47203062 - 47203152
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggattatgaagtctggaaatctcaagaacatttttg 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| ||||||  ||||||||    
T  47203062 gattatacataagaattgtccggattataaaatccgaaatagtaaacatgattccggattatgaaatccggaaacctcaagggcatttttg 47203152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 18951449 - 18951385
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggattatgaa 74  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  18951449 gattatacataagaattgtccggattataaaatccgaaatagtaaacatgattccggattatgaa 18951385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 10 - 154
Target Start/End: Original strand, 8155473 - 8155616
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggattatgaagtctggaaatctcaagaacatttttgnnnnnnnnc 109  Q
    |||||||| |||| ||||||||||||||||||||| |||||||||||||| ||| |||||||||| || ||||| |||||| |||||||||        |    
T  8155473 gattatacataagtattgtccggattataaaatccaaaatagtaaacatgattctggattatgaaatccggaaacctcaaggacatttttg-gaaaaaac 8155571  T
Q  110 gcagagcacgcgagaatcctataggatggaataagtaatactcat 154  Q
    |  | || ||||||||| ||||||||||||| |||||||||||||    
T  8155572 gttgggcgcgcgagaattctataggatggaaaaagtaatactcat 8155616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 9152360 - 9152409
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  9152360 gattatacataagaattgtccggattataaaatccgaaatagtaaacatg 9152409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 3304329 - 3304265
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggattatgaa 74  Q
    |||||||| |||||||| ||||||||||||||||||||||| |||||||| ||| ||||||||||    
T  3304329 gattatacataagaattatccggattataaaatccgaaataataaacatgattctggattatgaa 3304265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 24041773 - 24041701
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggattatgaagtctggaa 82  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| ||| | || |||||||    
T  24041773 gattatacataagaattgtcaggattataaaatccgaaatagtaaacatgattccgaattttaaaatctggaa 24041701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 42864682 - 42864626
Alignment:
Q  13 tatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||    
T  42864682 tatacttaagaattgtccggattataaaatccaaaatagtaaacatgaatccggatt 42864626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 33573626 - 33573571
Alignment:
Q  19 taagaattgtccggattataaaatccgaaatagtaaacatgcttccggattatgaa 74  Q
    |||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||    
T  33573626 taagaattgttcggattataaaatccaaaatagtaaacatgattccggattatgaa 33573571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 37517846 - 37517787
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||  ||||||||    
T  37517846 gattatacataagaattgtccagattataaaatccgaaatagtaaacatgaatccggatt 37517787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 42925221 - 42925162
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||  ||||||||    
T  42925221 gattatacataagaattgtccggattataaaatccaaaatagtaaacatgaatccggatt 42925162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 19818952 - 19819001
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  19818952 gattatacataagaattgtccggattataaaatccgaaataataaacatg 19819001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 36468132 - 36468083
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  36468132 gattatacataagaattgtccggattataaaatccaaaatagtaaacatg 36468083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 19225181 - 19225133
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacat 58  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||    
T  19225181 gattatacataagaattgtccagattataaaatccgaaatagtaaacat 19225133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 36629781 - 36629840
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||||||| ||||||||||||  |||||||||||||||||||||||||||  ||||||||    
T  36629781 gattatacataagaattgtccatattataaaatccgaaatagtaaacatgaatccggatt 36629840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 3936560 - 3936609
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    |||||||| |||||||||||||||||||||||||  ||||||||||||||    
T  3936560 gattatacataagaattgtccggattataaaatctaaaatagtaaacatg 3936609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 6467886 - 6467837
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    |||||||| |||||||||| ||||||||||||||||||| ||||||||||    
T  6467886 gattatacataagaattgttcggattataaaatccgaaaaagtaaacatg 6467837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 43737666 - 43737715
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    |||||||| ||||||||||||||||||||||||  |||||||||||||||    
T  43737666 gattatacataagaattgtccggattataaaatatgaaatagtaaacatg 43737715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 24689919 - 24689877
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagt 52  Q
    |||||||| |||||||||||||||||||||||| |||||||||    
T  24689919 gattatacataagaattgtccggattataaaattcgaaatagt 24689877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 36408931 - 36408979
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacat 58  Q
    |||||||| |||||||| |||||||| ||||||| ||||||||||||||    
T  36408931 gattatacataagaattatccggattgtaaaatctgaaatagtaaacat 36408979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 100
Target Start/End: Complemental strand, 2358197 - 2358107
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggattatgaagtctggaaatctcaagaacatttttg 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| ||||||  ||||||||    
T  2358197 gattatacataagaattgtccggattataaaatccgaaatagtaaacatgattccggattatgaaatccggaaacctcaagggcatttttg 2358107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 100
Target Start/End: Original strand, 3938762 - 3938852
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggattatgaagtctggaaatctcaagaacatttttg 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| ||||||  ||||||||    
T  3938762 gattatacataagaattgtccggattataaaatccgaaatagtaaacatgattccggattatgaaatccggaaacctcaagggcatttttg 3938852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 100
Target Start/End: Original strand, 47302579 - 47302669
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggattatgaagtctggaaatctcaagaacatttttg 100  Q
    |||||||  |||||||||||||||||||||||| |||||||||||||||| |||| ||||||||| |||||||| ||||||||||||||||    
T  47302579 gattatatataagaattgtccggattataaaattcgaaatagtaaacatgattccagattatgaaatctggaaacctcaagaacatttttg 47302669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 151
Target Start/End: Original strand, 8657700 - 8657840
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggattatgaagtctggaaatctcaagaacatttttgnnnnnnnnc 109  Q
    |||||||| | |||||||||||||||||||||||| |||||||||||||| |||||||||||||| || ||||| |||||| |||||||||        |    
T  8657700 gattatacatgagaattgtccggattataaaatccaaaatagtaaacatgattccggattatgaaatccggaaacctcaaggacatttttg-aaaaaaac 8657798  T
Q  110 gcagagcacgcgagaatcctataggatggaataagtaatact 151  Q
    |||| || ||||||||||||||||||| | | ||||||||||    
T  8657799 gcagggcgcgcgagaatcctataggattggaaaagtaatact 8657840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 50716826 - 50716875
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  50716826 gattatacataagaattgtccggattataaaatccgaaatagtaaacatg 50716875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 50796021 - 50795972
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  50796021 gattatacataagaattgtccggattataaaatccgaaatagtaaacatg 50795972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 3351644 - 3351585
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||  ||||||||    
T  3351644 gattatacataagaattgtccagattataaaatccgaaatagtaaacatgaatccggatt 3351585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 39150357 - 39150416
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||  ||||||||    
T  39150357 gattatacataagaattgtccggattataaaatccaaaatagtaaacatgaatccggatt 39150416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 46622386 - 46622327
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||  ||||||||    
T  46622386 gattatacataagaattgtccgaattataaaatccgaaatagtaaacatgaatccggatt 46622327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 47130916 - 47130975
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||  ||||||||    
T  47130916 gattatacataagaattgtctggattataaaatccgaaatagtaaacatgaatccggatt 47130975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 3902391 - 3902342
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  3902391 gattatacataagaattgttcggattataaaatccgaaatagtaaacatg 3902342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 41301479 - 41301528
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  41301479 gattatacataagaattgtccggattataaaatctgaaatagtaaacatg 41301528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 52777793 - 52777842
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  52777793 gattatacataagaattgtccgaattataaaatccgaaatagtaaacatg 52777842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 500762 - 500714
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacat 58  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||    
T  500762 gattatacataagaattgtccagattataaaatccgaaatagtaaacat 500714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 26053321 - 26053262
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||||||  |||||||||||||||||||||||| ||||||||||||||||  ||||||||    
T  26053321 gattataaataagaattgtccggattataaaattcgaaatagtaaacatgaatccggatt 26053262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 38977331 - 38977272
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||||||| |||||||||||||||||||||||||| ||||| ||||||||  ||||||||    
T  38977331 gattatacataagaattgtccggattataaaatccaaaatattaaacatgaatccggatt 38977272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 49095793 - 49095734
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||||||| ||||||||||||||||||||||||| ||||| |||||||||  ||||||||    
T  49095793 gattatacataagaattgtccggattataaaatctgaaatggtaaacatgaatccggatt 49095734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 35142653 - 35142702
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    |||||| | ||||||||||||| |||||||||||||||||||||||||||    
T  35142653 gattatgcataagaattgtccgaattataaaatccgaaatagtaaacatg 35142702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 47739520 - 47739471
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    |||||||| |||||||||||||||||||||||||| |||||||| |||||    
T  47739520 gattatacataagaattgtccggattataaaatccaaaatagtagacatg 47739471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 54588326 - 54588269
Alignment:
Q  12 ttatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||||| |||||||| || |||||||||||||||||||||||||||||  ||||||||    
T  54588326 ttatacataagaattttctggattataaaatccgaaatagtaaacatgaatccggatt 54588269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 33439756 - 33439812
Alignment:
Q  13 tatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    ||||| || ||||||||| ||||||||||||||||||||||||||||  ||||||||    
T  33439756 tatacatatgaattgtccagattataaaatccgaaatagtaaacatgaatccggatt 33439812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 41485878 - 41485818
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagt-aaacatgcttccggatt 69  Q
    |||||||  ||||||||||||||||||||||||||||||| || |||||||  ||||||||    
T  41485878 gattatatataagaattgtccggattataaaatccgaaattgtgaaacatgaatccggatt 41485818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 152
Target Start/End: Original strand, 32542789 - 32542931
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggattatgaagtctggaaatctcaagaacatttttgnnnnnnnnc 109  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||| || ||||| ||||||   |||||||        |    
T  32542789 gattatacataagaattgtccggattataaaatccaaaatagtaaacatgattccggattatgaaatccggaaacctcaagggtatttttggaaaaaaac 32542888  T
Q  110 gcagagcacgcgagaatcctataggatggaataagtaatactc 152  Q
    |||| ||  |||||||||||||||| ||||| |||||||||||    
T  32542889 gcagggcgtgcgagaatcctatagggtggaaaaagtaatactc 32542931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 49786868 - 49786947
Alignment:
Q  21 agaattgtccggattataaaatccgaaatagtaaacatgcttccggattatgaagtctggaaatctcaagaacatttttg 100  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| |||||| |||||||||    
T  49786868 agaattgtccggattataaaatccgaaatagtaaacatgattccggattatgaaatccggaaacctcaaggacatttttg 49786947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 44937873 - 44937809
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggattatgaa 74  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  44937873 gattatacataagaattgtccggattataaaatccgaaatagtaaacatgattccggattatgaa 44937809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 23443308 - 23443372
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggattatgaa 74  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  23443308 gattatacataagaattgtccggattataaaatccgaaatagtaaacatgattctggattatgaa 23443372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 7011790 - 7011849
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  7011790 gattatacataagaattgtccggattataaaatccgaaatagtaaacatgaatccggatt 7011849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 17000888 - 17000947
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  17000888 gattatacataagaattgtccggattataaaatccgaaatagtaaacatgaatccggatt 17000947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 32817390 - 32817341
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  32817390 gattatacataagaattgtccggattataaaatccgaaatagtaaacatg 32817341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 99
Target Start/End: Complemental strand, 33610985 - 33610896
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggattatgaagtctggaaatctcaagaacattttt 99  Q
    |||||||| ||||||||||||| |||||||||| |||||||||||||||| || ||||||||||| |  ||||| ||||||  |||||||    
T  33610985 gattatacataagaattgtccgaattataaaattcgaaatagtaaacatgatttcggattatgaaattcggaaacctcaagggcattttt 33610896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 34162372 - 34162313
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||  ||||||||    
T  34162372 gattatacataataattgtccggattataaaatccgaaatagtaaacatgaatccggatt 34162313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 28866225 - 28866175
Alignment:
Q  19 taagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  28866225 taagaattgtccggattataaaatccgaaatagtaaacatgaatccggatt 28866175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 41584182 - 41584133
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  41584182 gattatacataagaattgtccggattataaaatccgaaatagtaatcatg 41584133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 49678026 - 49678071
Alignment:
Q  14 atacttaagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    |||| |||||||||||||||||||||||||||||||||||||||||    
T  49678026 atacataagaattgtccggattataaaatccgaaatagtaaacatg 49678071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 52744439 - 52744390
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  52744439 gattatacataagaattgtccggattataaaattcgaaatagtaaacatg 52744390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 40650288 - 40650229
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    ||||| || ||||||||||| |||||||||||||||||||||||||||||  ||||||||    
T  40650288 gattaaacataagaattgtctggattataaaatccgaaatagtaaacatgaatccggatt 40650229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 40907513 - 40907454
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||||||| ||| ||||||||||||||||||||| |||||||||||||||  ||||||||    
T  40907513 gattatacataaaaattgtccggattataaaatctgaaatagtaaacatgaatccggatt 40907454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 38885790 - 38885839
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    |||||||| ||||||||||||||||||||||| || ||||||||||||||    
T  38885790 gattatacataagaattgtccggattataaaaccccaaatagtaaacatg 38885839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 45567485 - 45567436
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    ||||| || |||||||||||||||||||||||||| ||||||||||||||    
T  45567485 gattacacataagaattgtccggattataaaatccaaaatagtaaacatg 45567436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 15069495 - 15069447
Alignment:
Q  11 attatacttaagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    ||||||| ||||||||||| | |||||||||||||||||||||||||||    
T  15069495 attatacataagaattgtctgaattataaaatccgaaatagtaaacatg 15069447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 667236 - 667295
Alignment:
Q  11 attatacttaagaattgtccggattataaaatccgaaatagt-aaacatgcttccggatt 69  Q
    ||||||| ||||||||||||| |||||||||||||||||||| |||||||  ||||||||    
T  667236 attatacataagaattgtccgaattataaaatccgaaatagtgaaacatgaatccggatt 667295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 45046446 - 45046397
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    |||||||| ||| ||||||||||||||||||||  |||||||||||||||    
T  45046446 gattatacataaaaattgtccggattataaaatttgaaatagtaaacatg 45046397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 42546507 - 42546565
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||||||| ||||||||||| ||||||| ||||| |||||||||||||||  ||||||||    
T  42546507 gattatacataagaattgtctggattat-aaatctgaaatagtaaacatgaatccggatt 42546565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 18583128 - 18583090
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaa 48  Q
    |||||||| |||||||||| |||||||||||||||||||    
T  18583128 gattatacataagaattgttcggattataaaatccgaaa 18583090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 34006842 - 34006884
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagt 52  Q
    |||||||| ||| |||| |||||||||||||||||||||||||    
T  34006842 gattatacataaaaattatccggattataaaatccgaaatagt 34006884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 4615458 - 4615506
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacat 58  Q
    ||||||||  ||||||| |||||||||||||||  ||||||||||||||    
T  4615458 gattatacacaagaattatccggattataaaatatgaaatagtaaacat 4615506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 10 - 100
Target Start/End: Complemental strand, 36948703 - 36948613
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggattatgaagtctggaaatctcaagaacatttttg 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |  | ||| |||||| |||||||||    
T  36948703 gattatacataagaattgtccggattataaaatccgaaatagtaaacatgattccggattatgaaattcgaaaacctcaaggacatttttg 36948613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 33452039 - 33451990
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  33452039 gattatacataagaattgtccggattataaaatccgaaatagtaaacatg 33451990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 41510010 - 41509961
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  41510010 gattatacataagaattgtccggattataaaatccgaaataataaacatg 41509961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 44465331 - 44465282
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  44465331 gattatacataagaattgtccggattataaaattcgaaatagtaaacatg 44465282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 16750025 - 16749966
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||||||| |||||||||||||||||||||||| | ||||||||||||||  ||||||||    
T  16750025 gattatacataagaattgtccggattataaaattcaaaatagtaaacatgaatccggatt 16749966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 39447724 - 39447783
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||||||| |||||||||| |||||||||||||||||||||||||| |||  ||||||||    
T  39447724 gattatacataagaattgttcggattataaaatccgaaatagtaaatatgaatccggatt 39447783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 25217353 - 25217304
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    ||||| || |||||||||| ||||||||||||||||||||||||||||||    
T  25217353 gattacacataagaattgttcggattataaaatccgaaatagtaaacatg 25217304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 41854477 - 41854428
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    |||||||| |||||||||||||  ||||||||||||||||||||||||||    
T  41854477 gattatacataagaattgtccgagttataaaatccgaaatagtaaacatg 41854428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 15994716 - 15994676
Alignment:
Q  19 taagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  15994716 taagaattgtccggattataaaatccaaaatagtaaacatg 15994676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 45153482 - 45153410
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggattatgaagtctggaa 82  Q
    |||||||| |||||||||| ||||||||||||||| |||||| |||||||  |||||||| | || |||||||    
T  45153482 gattatacataagaattgttcggattataaaatccaaaatagcaaacatgaatccggattttaaaatctggaa 45153410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 17474372 - 17474313
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    ||||||||  ||||||||| |||||||||||||| |||||||||||||||  ||||||||    
T  17474372 gattatacacaagaattgttcggattataaaatctgaaatagtaaacatgaatccggatt 17474313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 32187461 - 32187402
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||||||| ||||||||||||| |||||||||||  ||||||||||||||  ||||||||    
T  32187461 gattatacataagaattgtccgaattataaaatctaaaatagtaaacatgaatccggatt 32187402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 38308422 - 38308380
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagt 52  Q
    |||||||| ||||||||||||||| ||||||||||||||||||    
T  38308422 gattatacataagaattgtccggagtataaaatccgaaatagt 38308380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 8450872 - 8450921
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    |||||||| ||||||||||| | |||||||||||| ||||||||||||||    
T  8450872 gattatacataagaattgtctgaattataaaatccaaaatagtaaacatg 8450921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 4268198 - 4268139
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||||||| |||||||||| | ||||||||||| | ||||||||||||||  ||||||||    
T  4268198 gattatacataagaattgttcagattataaaatgcaaaatagtaaacatgaatccggatt 4268139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 45
Target Start/End: Original strand, 42894954 - 42894989
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccg 45  Q
    |||||||| |||||||||||||||||||||||||||    
T  42894954 gattatacataagaattgtccggattataaaatccg 42894989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 8e-24; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 38030842 - 38030754
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggattatgaagtctggaaatctcaagaacatttt 98  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||   |||||||||||||| || ||||||||||| ||||||||    
T  38030842 gattatacataagaattgtccggattataaaatctgaaatagtaaacaccattccggattatgaaatccggaaatctcaataacatttt 38030754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 10 - 155
Target Start/End: Complemental strand, 26189899 - 26189755
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggattatgaagtctggaaatctcaagaacatttttgnnnnnnnnc 109  Q
    ||||| || ||||||||||||| ||||||||||| ||||||||||||||| || ||||||||||| |   ||||||||||| |||||||||        |    
T  26189899 gattaaacataagaattgtccgaattataaaatctgaaatagtaaacatgatttcggattatgaaattcagaaatctcaaggacatttttg-aaaaaaac 26189801  T
Q  110 gcagagcacgcgagaatcctataggatggaataagtaatactcatt 155  Q
    |||| || ||||||||||||||||||||| | ||| |||| |||||    
T  26189800 gcagggcgcgcgagaatcctataggatgggaaaaggaatattcatt 26189755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 20892151 - 20892210
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  20892151 gattatacctaagaattgtccggattataaaatccgaaatagtaaacatgaatccggatt 20892210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 33488149 - 33488208
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  33488149 gattatacataagaattgtccggattataaaatccgaaatagtaaacatgaatccggatt 33488208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 37183370 - 37183311
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  37183370 gattatacataagaattgtccggattataaaatccgaaatagtaaacatgaatccggatt 37183311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 10 - 100
Target Start/End: Complemental strand, 12464688 - 12464598
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggattatgaagtctggaaatctcaagaacatttttg 100  Q
    |||||||| |||||||| |||  || |||||||||||||||||||||||| ||||||||||| || ||  |||||||||||| ||||||||    
T  12464688 gattatacataagaattctccaaataataaaatccgaaatagtaaacatgattccggattataaaatccagaaatctcaagagcatttttg 12464598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 31220921 - 31220872
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  31220921 gattatacataagaattgtccggattataaaatccgaaatagtaaacatg 31220872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 4064378 - 4064319
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||  ||||||||    
T  4064378 gattatacataagaattgtccggattataaaatccaaaatagtaaacatgaatccggatt 4064319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 6157677 - 6157736
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||  ||||||||    
T  6157677 gattatacgtaagaattgtctggattataaaatccgaaatagtaaacatgaatccggatt 6157736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 6157902 - 6157961
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||  ||||||||    
T  6157902 gattatacataagaattgtccgaattataaaatccgaaatagtaaacatgaatccggatt 6157961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 15799771 - 15799830
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||  ||||||||    
T  15799771 gattatacataagaattgtccggattataaaatccgaaataataaacatgaatccggatt 15799830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 31928708 - 31928649
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||  ||||||||    
T  31928708 gattatacataagaattgtccggattataaaatcctaaatagtaaacatgaatccggatt 31928649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 14112264 - 14112314
Alignment:
Q  19 taagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  14112264 taagaattgtccggattataaaatccgaaatagtaaacatgaatccggatt 14112314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 38872197 - 38872255
Alignment:
Q  11 attatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||||  ||||||||    
T  38872197 attatacataagaattgtccggattataaaatctgaaatagtaaacatgaatccggatt 38872255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 38692376 - 38692327
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  38692376 gattatacataagaattgtccggattataaaatctgaaatagtaaacatg 38692327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 29863098 - 29863157
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||||||| |||||||||||||||||||| ||| ||||||||||||||||  ||||||||    
T  29863098 gattatacataagaattgtccggattatataattcgaaatagtaaacatgaatccggatt 29863157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 24203305 - 24203256
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    |||||||  |||||||||||||||||||||||||||||| ||||||||||    
T  24203305 gattatatataagaattgtccggattataaaatccgaaaaagtaaacatg 24203256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 38372845 - 38372904
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||||||| |||||||| |||||||||||||||| ||||||||||| |||  ||||||||    
T  38372845 gattatacgtaagaattatccggattataaaatctgaaatagtaaatatgaatccggatt 38372904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 32841557 - 32841515
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagt 52  Q
    |||||||  ||||||||||||||||||||||||||||||||||    
T  32841557 gattatatataagaattgtccggattataaaatccgaaatagt 32841515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 40619566 - 40619521
Alignment:
Q  14 atacttaagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    |||| |||||||||| |||||||||||||| |||||||||||||||    
T  40619566 atacataagaattgttcggattataaaatctgaaatagtaaacatg 40619521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 39525305 - 39525339
Alignment:
Q  21 agaattgtccggattataaaatccgaaatagtaaa 55  Q
    |||||||||||||||||||||||| ||||||||||    
T  39525305 agaattgtccggattataaaatccaaaatagtaaa 39525339  T

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Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 15958301 - 15958341
Alignment:
Q  19 taagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    |||||||| | ||||||||||||||| ||||||||||||||    
T  15958301 taagaattattcggattataaaatccaaaatagtaaacatg 15958341  T

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Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 26898379 - 26898339
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaata 50  Q
    |||||||| |||||||||||| |||||||||||| ||||||    
T  26898379 gattatacataagaattgtccagattataaaatctgaaata 26898339  T

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Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 31519461 - 31519380
Alignment:
Q  19 taagaattgtccggattataaaatccgaaatagtaaacatgcttccggattatgaagtctggaaatctcaagaacatttttg 100  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| || ||||| ||||||  ||||||||    
T  31519461 taagaattgtccgaattataaaatccgaaatagtaaacatgattccggattatgaaatccggaaacctcaagggcatttttg 31519380  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 21004894 - 21004958
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggattatgaa 74  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||| | ||||||||||||||    
T  21004894 gattatacataagaattgtccggattataaaattcgaaatagtaaacaagattccggattatgaa 21004958  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 3095266 - 3095325
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  3095266 gattatacataagaattgtccggattataaaatccgaaatagtaaacatgaatccggatt 3095325  T

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Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 8885034 - 8884975
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  8885034 gattatacataagaattgtccggattataaaatccgaaatagtaaacatgaatccggatt 8884975  T

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Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 9074106 - 9074165
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  9074106 gattatacataagaattgtccggattataaaatccgaaatagtaaacatgaatccggatt 9074165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 44106792 - 44106841
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  44106792 gattatacataagaattgtccggattataaaatccgaaatagtaaacatg 44106841  T

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Target: chr8; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 11697901 - 11697842
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||||  ||||||||    
T  11697901 gattatacataagaactgtccggattataaaatccgaaatagtaaacatgaatccggatt 11697842  T

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Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 34854277 - 34854326
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  34854277 gattatacataagaattgtccggattataaaatccaaaatagtaaacatg 34854326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 42280483 - 42280436
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaaca 57  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||    
T  42280483 gattatacataagaattgtccggattataaaatccaaaatagtaaaca 42280436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 14163631 - 14163573
Alignment:
Q  11 attatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    ||||||| ||||||||||||| |||||||||| ||||||||||||||||  ||||||||    
T  14163631 attatacataagaattgtccgaattataaaattcgaaatagtaaacatgaatccggatt 14163573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 11698647 - 11698696
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    |||||||| |||||| | ||||||||||||||||||||||||||||||||    
T  11698647 gattatacataagaactatccggattataaaatccgaaatagtaaacatg 11698696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 27927534 - 27927485
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    |||||||| ||||||||||| ||||||||||||| |||||||||||||||    
T  27927534 gattatacataagaattgtctggattataaaatctgaaatagtaaacatg 27927485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 34853895 - 34853952
Alignment:
Q  12 ttatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||||| |||||||||||||||||||||||||| ||||||||||| ||  ||||||||    
T  34853895 ttatacataagaattgtccggattataaaatccaaaatagtaaacgtgaatccggatt 34853952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 40995235 - 40995284
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    ||||| || ||||||||||||| |||||||||||||||||||||||||||    
T  40995235 gattacacataagaattgtccgaattataaaatccgaaatagtaaacatg 40995284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 28917356 - 28917405
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    |||||||| ||||||||||  |||||||||||||| ||||||||||||||    
T  28917356 gattatacataagaattgtttggattataaaatccaaaatagtaaacatg 28917405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 21594357 - 21594399
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagt 52  Q
    |||||||| |||||||| | |||||||||||||||||||||||    
T  21594357 gattatacgtaagaatttttcggattataaaatccgaaatagt 21594399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 141578 - 141530
Alignment:
Q  11 attatacttaagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  141578 attatacataagaattgtccggattataaaatccgaaatagtaaacatg 141530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 173944 - 173885
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||  ||||||||    
T  173944 gattatacataagaattgtccggattataaaatccaaaatagtaaacatgaatccggatt 173885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 141059 - 141107
Alignment:
Q  21 agaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||    
T  141059 agaattgtccggattataaaatccgaaatagtaaacatgaatccggatt 141107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 9085 - 9026
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggatt 69  Q
    |||| ||| |||||||||||||||||||||||||| ||||||||||||||  ||||||||    
T  9085 gattttacataagaattgtccggattataaaatccaaaatagtaaacatgaatccggatt 9026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0770 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0770
Description:

Target: scaffold0770; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 4364 - 4413
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    |||||||| ||||||||||| ||||||||||||| |||||||||||||||    
T  4364 gattatacataagaattgtctggattataaaatctgaaatagtaaacatg 4413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 102668 - 102717
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatg 59  Q
    |||||||| ||||||||||| ||||||||||||| |||||||||||||||    
T  102668 gattatacataagaattgtctggattataaaatctgaaatagtaaacatg 102717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 2969 - 2897
Alignment:
Q  10 gattatacttaagaattgtccggattataaaatccgaaatagtaaacatgcttccggattatgaagtctggaa 82  Q
    |||||||| || ||||||||||||||||||||||| ||||| ||||||||  |||||||| | || |||||||    
T  2969 gattatacataggaattgtccggattataaaatccaaaatattaaacatgaatccggattttaaaatctggaa 2897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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