View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12417_high_6 (Length: 256)
Name: NF12417_high_6
Description: NF12417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12417_high_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 14 - 256
Target Start/End: Original strand, 43962772 - 43963022
Alignment:
| Q |
14 |
atataaaactcaacttccagaattcataaatgaaaattattttttataaaatcataggccagattgaccatagtccatttatctcc-attaacgtgtacg |
112 |
Q |
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| T |
43962772 |
atataaaactcaacttccagaattcataaatgaaaattattttttataaaatcataggccagattgaccatagtccatttatctcccatttacgtgtacg |
43962871 |
T |
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| Q |
113 |
tctcttccctccctcgctattttaaattttaatctttttgaggcaaatgactaaatggcctcatgatgctccgttcaagctaaaattatcatctaatact |
212 |
Q |
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| T |
43962872 |
tctcttcccttccttgctattttaaattttaatctttttgaggcaaatgactaaatggcctcatcatgctccgctcatgctaaaattatcatctaatact |
43962971 |
T |
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| Q |
213 |
-------cacaggtaaactaatggcatacagattgattccatcaatgatgt |
256 |
Q |
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| T |
43962972 |
atgtcaacacaggtaaactaatggcatacagattgataccatcaatgatgt |
43963022 |
T |
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