View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12417_low_1 (Length: 425)
Name: NF12417_low_1
Description: NF12417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12417_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 68 - 409
Target Start/End: Original strand, 863676 - 864019
Alignment:
| Q |
68 |
ttataaggtaaattaatcattttatggaacatataataggatgagatgttggagccagcagtgaatggaacaaagaatgtgattatagcgtctgcggaag |
167 |
Q |
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| T |
863676 |
ttataaggtgaattaatcattttatggaacatataataggatgagatgttagagccagcagtgaatggaactaagaatgtgattatagcgtccgcggaag |
863775 |
T |
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| Q |
168 |
caaaagtgcgacgtgttgtgttcacttcatcgattggaacggtctatatggacacaaatactagtagagatgttgtcgttgatgaatcatattggagtga |
267 |
Q |
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| T |
863776 |
ctaaagtgcgacgtgttgttttcacttcatcgattggaacggtctatatggacccaaatactagtagagatgttgtcgttgatgaatcatattggagtga |
863875 |
T |
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| Q |
268 |
tttagagcattgcaagaacaccaaggtttgattaattcactatgttcgtcttgtgcagagatctggttattaattaattaggtgatgaataatttaaatt |
367 |
Q |
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| T |
863876 |
tttagagcattgcaagaacaccaaggtttgattaattcactctgttcgtcttgtgcagagatctggttattaattaattaggtgatgaataatttaactt |
863975 |
T |
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| Q |
368 |
attttt--tgtgtgcagaactggtattgttatgggaagacagtg |
409 |
Q |
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| T |
863976 |
tttttttgtgtgtgcagaactggtattgttatgggaagacagtg |
864019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 210 - 301
Target Start/End: Original strand, 854092 - 854182
Alignment:
| Q |
210 |
tctatatggacacaaatactagtagagatgttgtcgttgatgaatcatattggagtgatttagagcattgcaagaacaccaaggtttgatta |
301 |
Q |
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| T |
854092 |
tctatttggacccaaatacaagtagggttgttgtggtt-atgattcatattggagtgatttagaatattgcaagaacaccaaggtttgatta |
854182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 117 - 294
Target Start/End: Original strand, 45242914 - 45243091
Alignment:
| Q |
117 |
tggagccagcagtgaatggaacaaagaatgtgattatagcgtctgcggaagcaaaagtgcgacgtgttgtgttcacttcatcgattggaacggtctatat |
216 |
Q |
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| T |
45242914 |
tggagccagcagtgaatggagcaaagaatgtgatcatagctggtgcagaagcaaaagtgaggcgcgtggttttcacatcatcaattggtgcagtctatat |
45243013 |
T |
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| Q |
217 |
ggacacaaatactagtagagatgttgtcgttgatgaatcatattggagtgatttagagcattgcaagaacaccaaggt |
294 |
Q |
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| T |
45243014 |
ggaccccaataggagtgttgatgtagaggttgatgagtcttgctggagtgatttggagttttgcaagaaaaccaaggt |
45243091 |
T |
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