View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12418_low_2 (Length: 524)
Name: NF12418_low_2
Description: NF12418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12418_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 438; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 1 - 509
Target Start/End: Original strand, 25290359 - 25290871
Alignment:
| Q |
1 |
catgctttgtgggagggaggaagaaacgacgtcacatcttttcttacactg--atgtggttatgaggatttggcaaaggat-gatgtgttggttagaatt |
97 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
25290359 |
catgttttgtgggtgggaggaagaaacgacgtcacatcttttcttacattgtgatgtggttatgaggatttggcaaaggattgatgtgttggttagaatt |
25290458 |
T |
|
| Q |
98 |
tcacttcataataccccataatctctttgtacattttgaatgttggttaaatgaggctacttctaagaaattaagaagggggttttgtttgatttggctt |
197 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
25290459 |
tcacttcataataccccataatctctatgtacattttgaatgttggttaaatgaggctatttctaagaaattaagaaggggattttgtttgatttggctt |
25290558 |
T |
|
| Q |
198 |
gcctctatttgagtgatttggaagcaaaggaatgagattattttcaataatggtgtgatggatatagatattttcattgagaatatcaagattctagctt |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||| |||||||||||||||| |
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| T |
25290559 |
gcctctatttgagtgatttggaagcaaaggaatgagattattttcaataatggtgtggtgaatgtagatattttcattgagaagatcaagattctagctt |
25290658 |
T |
|
| Q |
298 |
ggtattagagtatgagtaagttaaaaatcggctcgtgtttgtattatgagtggagttggaaccctcgggagtgcttacttagatagtttttccggtg-tt |
396 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
25290659 |
ggtattggagtatgagtaagttaaaaatcggctcgtgtttgtattatgagtggagttggaaccctcgggagtgcttacttagatagtttttccggtgttt |
25290758 |
T |
|
| Q |
397 |
tttacctttggagctgttattataagactgctgtgttgtctttcagtgctgctgttttttctgtttttggctgcgttatgctcctgacagttttgctagt |
496 |
Q |
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|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25290759 |
tttacctttggagctgttattataagactgttgtgttgtctttcagtgctgctgttttttctgtttttggctgcgttatgctcctgacagttttgctagt |
25290858 |
T |
|
| Q |
497 |
ggtgcggtctgtg |
509 |
Q |
| |
|
||||||||||||| |
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|
| T |
25290859 |
ggtgcggtctgtg |
25290871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 114 - 221
Target Start/End: Complemental strand, 19251230 - 19251123
Alignment:
| Q |
114 |
cataatctctttgtacattttgaatgttggttaaatgaggctacttctaagaaattaagaagggggttttgtttgatttggcttgcctctatttgagtga |
213 |
Q |
| |
|
|||||||| ||||| | ||||||||||||||| || |||||||||||||| ||| | |||||||| |||| |||||||||| ||| |||||||| | | |
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|
| T |
19251230 |
cataatctttttgttcgttttgaatgttggtttaaggaggctacttctaataaaattagaaggggtttttatttgatttgggttgattctatttgggcta |
19251131 |
T |
|
| Q |
214 |
tttggaag |
221 |
Q |
| |
|
|||||||| |
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|
| T |
19251130 |
tttggaag |
19251123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 295 - 383
Target Start/End: Complemental strand, 19251089 - 19251002
Alignment:
| Q |
295 |
cttggtattagagtatgagtaagttaaaaatcggctcgtgtttgtattatgagtggagttggaaccctcgggagtgcttacttagatag |
383 |
Q |
| |
|
|||||| || ||||||||||||||| |||| | | ||||||||||||| ||||| ||| |||||||||| | ||||||||||||||| |
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|
| T |
19251089 |
cttggttttggagtatgagtaagttgaaaa-catcatgtgtttgtattataagtggtgttagaaccctcggtaatgcttacttagatag |
19251002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 7e-35; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 96 - 383
Target Start/End: Complemental strand, 9443821 - 9443534
Alignment:
| Q |
96 |
tttcacttcataataccccataatctctttgtacattttgaatgttggttaaatgaggctacttctaagaaattaagaagggggttttgtttgatttggc |
195 |
Q |
| |
|
||||| ||| ||||||| |||||||| ||| |||||||||||| |||| |||||||| ||||| |||| | ||| ||| |||| || ||||||| |
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|
| T |
9443821 |
tttcatttcgtaataccacataatcttttttcacattttgaatggtggtattatgaggctccttctttgaaaatgagacgggtatttttcttaatttggc |
9443722 |
T |
|
| Q |
196 |
ttgcctctatttgagtgatttggaagcaaaggaatgagattattttcaataatggtgtgatggatatagatattttcattgagaatatcaagattctagc |
295 |
Q |
| |
|
||| |||||||| || ||||||||| ||| ||||||| | ||||| |||||||||||| | || || || || | |||||||||||| | ||||| |
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|
| T |
9443721 |
ttgattctatttgggttatttggaagaaaaagaatgaggtgatttttaataatggtgtggttgagatggaggaattggtggagaatatcaaggtcctagc |
9443622 |
T |
|
| Q |
296 |
ttggtattagagtatgagtaagttaaaaatcggctcgtgtttgtattatgagtggagttggaaccctcgggagtgcttacttagatag |
383 |
Q |
| |
|
|||||||| ||||||||||||| ||||||| | |||| |||| |||||||||| |||||||||||||||||||||||||| ||||| |
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|
| T |
9443621 |
ttggtattggagtatgagtaagctaaaaatagcgacgtgcttgtcttatgagtggtgttggaaccctcgggagtgcttacttcgatag |
9443534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 330 - 388
Target Start/End: Complemental strand, 744492 - 744434
Alignment:
| Q |
330 |
tcgtgtttgtattatgagtggagttggaaccctcgggagtgcttacttagatagttttt |
388 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||| || | |||| |||||||| |||| |
|
|
| T |
744492 |
tcgtgtttgtattacgagtggtgttggaaccctcgagaatacttaattagatagctttt |
744434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 330 - 388
Target Start/End: Complemental strand, 748422 - 748364
Alignment:
| Q |
330 |
tcgtgtttgtattatgagtggagttggaaccctcgggagtgcttacttagatagttttt |
388 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||| || | |||| |||||||| |||| |
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|
| T |
748422 |
tcgtgtttgtattacgagtggtgttggaaccctcgagaatacttaattagataggtttt |
748364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 130 - 383
Target Start/End: Original strand, 4282118 - 4282372
Alignment:
| Q |
130 |
attttgaatgttggttaaatgaggctacttctaagaaattaagaagggggttttgtttgatttggcttgcctctatttgagtgatttggaagcaaaggaa |
229 |
Q |
| |
|
||||||||||||||| |||||||| | |||| |||| ||||| |||| ||||| |||||||||||||| |||||||| || ||||||||| ||| || |
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|
| T |
4282118 |
attttgaatgttggtattatgaggcttcatctaggaaaataagacggggattttgcttgatttggcttgcttctatttgggttatttggaagagaagaaa |
4282217 |
T |
|
| Q |
230 |
tgagattattttcaataatggtgtgatggatatagatattttcattgagaatatcaagattctagcttggtattagagtatgagtaag-ttaaaaatcgg |
328 |
Q |
| |
|
|||| |||| || ||||||||||| | || || || | | | |||||||| ||| ||||||||||||||| ||||||||||||| | |||||| | |
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|
| T |
4282218 |
tgaggttatctttaataatggtgttgtagagatggaggatgtggtcgagaatataaaggttctagcttggtattggagtatgagtaagctgaaaaatagc |
4282317 |
T |
|
| Q |
329 |
ctcgtgtttgtattatgagtggagttggaaccctcgggagtgcttacttagatag |
383 |
Q |
| |
|
| |||||||||||||||||| |||||||||||||||| || ||||| |||||| |
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|
| T |
4282318 |
gacatgtttgtattatgagtggtgttggaaccctcgggattgtttactaagatag |
4282372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 279 - 357
Target Start/End: Complemental strand, 25187958 - 25187880
Alignment:
| Q |
279 |
aatatcaagattctagcttggtattagagtatgagtaagttaaaaatcggctcgtgtttgtattatgagtggagttgga |
357 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||||||| | | ||| ||||||||||||||| |||||| |
|
|
| T |
25187958 |
aatatcaagatgttagcttggtattggagtatgagtaagttaaaaatagcattgtgcttgtattatgagtggtgttgga |
25187880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 228 - 399
Target Start/End: Complemental strand, 19724369 - 19724198
Alignment:
| Q |
228 |
aatgagattattttcaataatggtgtgatggatatagatattttcattgagaatatcaagattctagcttggtattagagtatgagtaagttaaaaatcg |
327 |
Q |
| |
|
||||||||||||||||||||||||||| | || |||| || ||||||||||||||| | |||||||||||| ||||||||||| |||||| | |
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|
| T |
19724369 |
aatgagattattttcaataatggtgtgcttgaggtagaagaattgattgagaatatcaaggtgttagcttggtattggagtatgagtagacaaaaaatgg |
19724270 |
T |
|
| Q |
328 |
gctcgtgtttgtattatgagtggagttggaaccctcgggagtgcttacttagatagtttttccggtgttttt |
399 |
Q |
| |
|
|| ||||||||||| |||| | |||||||||||| |||||| |||||||||||||| || ||||||||| |
|
|
| T |
19724269 |
tatcatgtttgtattaagagttgtgttggaaccctcaggagtgtttacttagatagttgttatggtgttttt |
19724198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 213 - 383
Target Start/End: Complemental strand, 15063174 - 15063000
Alignment:
| Q |
213 |
atttggaagcaaaggaatgagattattttcaataatggtgtgatggatatagatattttcattgagaatatcaagattc----tagcttggtattagagt |
308 |
Q |
| |
|
||||||||||| | |||||||||||| ||||||||||||||| | || |||| || ||||||||||||||| | |||||||||||| |||| |
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|
| T |
15063174 |
atttggaagcatatgaatgagattatcttcaataatggtgtggttgaggtagaggaattgattgagaatatcaaggtgtacgttagcttggtattggagt |
15063075 |
T |
|
| Q |
309 |
atgagtaagttaaaaatcggctcgtgtttgtattatgagtggagttggaaccctcgggagtgcttacttagatag |
383 |
Q |
| |
|
||||||| | ||||| |||||||||||||| |||||| ||||||||||||||||| | ||||||||||| |
|
|
| T |
15063074 |
atgagtaggcgaaaaacgatatcgtgtttgtattacgagtggcgttggaaccctcgggagcgtctacttagatag |
15063000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 276 - 383
Target Start/End: Original strand, 28800958 - 28801065
Alignment:
| Q |
276 |
gagaatatcaagattctagcttggtattagagtatgagtaagttaaaaatcggctcgtgtttgtattatgagtggagttggaaccctcgggagtgcttac |
375 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||| || | ||||| | || |||| ||||||||| ||| ||||||||||| | | || |||| |
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|
| T |
28800958 |
gagaatatcaaggttctagcttggtattggagtatgagcaaacttaaaatagcatcatgttcgtattatgattggtgttggaacccttagaattgtttac |
28801057 |
T |
|
| Q |
376 |
ttagatag |
383 |
Q |
| |
|
|||||||| |
|
|
| T |
28801058 |
ttagatag |
28801065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 185 - 254
Target Start/End: Original strand, 17193029 - 17193098
Alignment:
| Q |
185 |
tttgatttggcttgcctctatttgagtgatttggaagcaaaggaatgagattattttcaataatggtgtg |
254 |
Q |
| |
|
||||||||||||||| |||||||| || ||||||||| ||| |||||||| |||||||| ||||||||| |
|
|
| T |
17193029 |
tttgatttggcttgcttctatttgggttatttggaagagaagaaatgagataattttcaaaaatggtgtg |
17193098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 276 - 383
Target Start/End: Original strand, 7859337 - 7859443
Alignment:
| Q |
276 |
gagaatatcaagattctagcttggtattagagtatgagtaagttaaaaatcggctcgtgtttgtattatgagtggagttggaaccctcgggagtgcttac |
375 |
Q |
| |
|
|||||||||||| |||| |||||||||| ||||||||||||| | | ||| | |||||||||||||||||||| ||| ||| || |||| || |||| |
|
|
| T |
7859337 |
gagaatatcaaggttcttgcttggtattggagtatgagtaagctgataatagcgacgtgtttgtattatgagtggtgttcgaattcttgggattg-ttac |
7859435 |
T |
|
| Q |
376 |
ttagatag |
383 |
Q |
| |
|
|||||||| |
|
|
| T |
7859436 |
ttagatag |
7859443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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