View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12418_low_3 (Length: 276)
Name: NF12418_low_3
Description: NF12418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12418_low_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 13410096 - 13410366
Alignment:
| Q |
1 |
agctaggtgaggcctcatagtaattacaaaatacataacagcaccaacaacctataggtgaggcctgaagtgaatagattcatattagtctccaattatt |
100 |
Q |
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| T |
13410096 |
agctaggtgaggcctcatagtaattaaaaaatacataacagcaccaacaacatataggtgaggcctgaagtgaatatattcataatagtctcca-ttatt |
13410194 |
T |
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| Q |
101 |
agcaatgcagtaacaataattattnnnnnnn-tgcaataagtaatgctatattgagtaactcattaaaacagaagataaacaaaataccttttacaggtt |
199 |
Q |
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| T |
13410195 |
agcaatgcagtaacaataattattaaaaaaaatgcaataagtaatgctatattgagtaactcattaaaacagaagataaacaaaatacctttaacagatt |
13410294 |
T |
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| Q |
200 |
gttggaagtacatgtacaattttctagtcaaaatgaaccataacctcattctggtatgagattaaaaatgcc |
271 |
Q |
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| T |
13410295 |
gttggaagtacatgtacaattttctggtcaaaatgaaccatagcctcattctggtatgagattaaaaatgcc |
13410366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 86 - 276
Target Start/End: Complemental strand, 3276751 - 3276563
Alignment:
| Q |
86 |
tagtctccaattattagcaatgcagtaacaataattattnnnnnnntgcaataagtaatgctatattgagtaactcattaaaacagaagataaacaaaat |
185 |
Q |
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| T |
3276751 |
tagtctcca-ttattagcaatgcagtaacaataattattaaatacatgcaataagtaatgcta-attgagtaactcattgaaacagaagataaacaaaat |
3276654 |
T |
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| Q |
186 |
accttttacaggttgttggaagtacatgtacaattttctagtcaaaatgaaccataacctcattctggtatgagattaaaaatgcccgtaa |
276 |
Q |
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| T |
3276653 |
acctttaacaggttgttggaggtgcatgtacaattttcgggtcaaaatgaaccatagcctcattctggtatgagattaaaaatgcccgtaa |
3276563 |
T |
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