View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12419_high_16 (Length: 442)
Name: NF12419_high_16
Description: NF12419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12419_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 41990373 - 41989927
Alignment:
| Q |
1 |
ttctgacacattaagcatgaacatgaatttaaatgataccttattgcctttaataccttagctaagatactatatcccatggttcatacatggtattctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41990373 |
ttctgacacattaagcatgaacatgaatttaaatgataccttattgcctttaataccttagctaagatactatatcccatggttcatacatggtattctt |
41990274 |
T |
|
| Q |
101 |
acgaatctaaaatgctaacatcatagttaggttcttatctcattcacaattatccagaaaccatacattccaaaaaatcaccaaannnnnnnagtaaacc |
200 |
Q |
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| T |
41990273 |
atgaatctaaaatgctaacatcatagttaggttcttatctcattcacaattatccagaaaccatacattccaaaaaatcaccaaatttttttagtgaacc |
41990174 |
T |
|
| Q |
201 |
aaaggtaccctccaaacgcaactaca-aga------ctaatccactcaaggtatttgagatctaattaaggggttgatctatcacaaatttaacacataa |
293 |
Q |
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| T |
41990173 |
aaaggta-cctccaaacgcaactacagagagtaatcctaatccactcgaggtatttgagatctaattaaggggttgatctatcacaaatttaacacataa |
41990075 |
T |
|
| Q |
294 |
acagtttatatactaatgggcccatgatcaaaacatgagaa----------------atgcactgttttttctaaaatgaaaatccacacagaacatttt |
377 |
Q |
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| T |
41990074 |
acagtttatatactaatgggcccatgatcaaaacatgagaatagcacaaatttgtagatgcactgttttttctaaaatgaaaatccacacagaacatttt |
41989975 |
T |
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| Q |
378 |
acaaacatcttatatgcacaaaaaagagtgggaaatgttggaacgctc |
425 |
Q |
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| T |
41989974 |
acaaacatcttatatgcacaaaaaagagtgggaaatgttggaacgctc |
41989927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 121 - 425
Target Start/End: Original strand, 1218627 - 1218933
Alignment:
| Q |
121 |
tcatagttaggttcttatctcattcacaattatccagaaaccatacattccaaaaaatcaccaaannnnnnnagtaaaccaaaggtaccctccaaacgca |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
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| T |
1218627 |
tcatagttaggttcttatctcattcacaattatccagaaaccatacattccaaaaaatcaccaaatttttttagtaaaccaaaggtaccctccaaatgca |
1218726 |
T |
|
| Q |
221 |
actaca-agactaatccactcaaggtatttgagatctaattaaggggttgatctatcacaaatttaacacataaacagtttatatactaatgggcccatg |
319 |
Q |
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| T |
1218727 |
actacagagactaatccactcgaggtatttgagatcaaattaaggggttgatctatcacaaatttaacacataaacagtttatatactaatgggcccatg |
1218826 |
T |
|
| Q |
320 |
atcaaaacatgagaa-atgcactgttttttctaaaatgaaaatccacacagaacattttacaaacatcttatatgcacaaaaaagagtgggaaatgttgg |
418 |
Q |
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| T |
1218827 |
atcaaaacatgagaagatgcactgttttttctaaaatgaaaatccacacagaacattttacaaacatcttatatgcacaaaaaagagtgggaaatgttgg |
1218926 |
T |
|
| Q |
419 |
aacgctc |
425 |
Q |
| |
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||||||| |
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|
| T |
1218927 |
aacgctc |
1218933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 376
Target Start/End: Complemental strand, 9975419 - 9975378
Alignment:
| Q |
335 |
atgcactgttttttctaaaatgaaaatccacacagaacattt |
376 |
Q |
| |
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||||| ||||||||||||||||||||| |||| ||||||||| |
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|
| T |
9975419 |
atgcaatgttttttctaaaatgaaaattcacatagaacattt |
9975378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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