View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12419_high_17 (Length: 430)
Name: NF12419_high_17
Description: NF12419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12419_high_17 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Original strand, 2829475 - 2829905
Alignment:
| Q |
1 |
ccactttgttctccagctccacaattctgctctgaagttccttttccttcttcatagatgaagttgttgaagtttccaaggcagtttcctttgactttat |
100 |
Q |
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| T |
2829475 |
ccactttgttctccagctccacaattctgctctgaagttccttttccttcttcatagatgaagttgttgaagtttccaaggcagtttcctttgactttat |
2829574 |
T |
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| Q |
101 |
caggccctgacataaacaatcttttatattaacataagaaggagaaaatgaaggatatatagtatatgttctgaaatattacaagagaaaacagcatcca |
200 |
Q |
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| T |
2829575 |
caggccctgacataaacaatcttttatattaacataagaaggagaaaatgaaggatatatagtatatgttctgaaatattacaagagaaaacagcatcca |
2829674 |
T |
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| Q |
201 |
gggagcaataaattttctt-nnnnnnnnncaacctatgtcttcatatcattgatgctggaatagttacctcaagcatttttattttctctctcagacttg |
299 |
Q |
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| T |
2829675 |
gggagcaataaattttcttaaaaaaaaaacaacctatgtcttcatatcattgatgctagaatagttacctcaagcatttttattttctctctcagacttg |
2829774 |
T |
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| Q |
300 |
ccttttcttttgaatgatgaggactagaagcaannnnnnngttgattgggatggttttagatccatcagaaagttggttgcgtccgttactatccccgaa |
399 |
Q |
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| T |
2829775 |
ccatttcttttgaatgatgaggactggaagcaatttttttgttgattgggatggttttagatccatcagaaagttggttgcgtccgttactatccctgaa |
2829874 |
T |
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| Q |
400 |
tctcttctcaatgctggttaatgcatcacct |
430 |
Q |
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| T |
2829875 |
tctcttctcaatgctggttaatgcatcacct |
2829905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 295
Target Start/End: Complemental strand, 40800725 - 40800694
Alignment:
| Q |
264 |
ttacctcaagcatttttattttctctctcaga |
295 |
Q |
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| T |
40800725 |
ttacctcaagcatttttattttctctctcaga |
40800694 |
T |
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