View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12419_high_18 (Length: 402)
Name: NF12419_high_18
Description: NF12419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12419_high_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 9 - 280
Target Start/End: Original strand, 41308560 - 41308831
Alignment:
| Q |
9 |
agcatagggtgagattttataaccttgaaatgaatcaagacatgcccataatggatgccaatggtgcctgagaggattgctgatatggaactatcaaaaa |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41308560 |
agcatagggtgagattttataaccttgaaatgaatcaagacgtgcccataatggatgccaatggtgcctgagaggattgctgatatggaactatcaaaaa |
41308659 |
T |
|
| Q |
109 |
gtaaaactcctttaagatatttctaataatatatatcagatgctactcaatacaaattttagagacaaatacctcaataagccctctggttcaaatggag |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41308660 |
gtaaaactcctttaagatatttctaataatatatatcagatgctactcaatacaaattttagagacaaatacctcaataagccctctggttcaaatggag |
41308759 |
T |
|
| Q |
209 |
caagacaccagcttggagcatcatcgcgaaatggaccctcacttggggaactaaatgtgcatgcctacaaat |
280 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41308760 |
caagacaccagcttggagcatcatcacgaaatggaccctcacttggggaactaaatgtgcatgcctacaaat |
41308831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 277 - 387
Target Start/End: Original strand, 41308884 - 41308994
Alignment:
| Q |
277 |
aaatattcagaccaatgccattttatttagaacaattttatcaacttgtgatcaatttttgacctgaaccttgtgtattttggttatacatataattact |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41308884 |
aaatattcagaccaatgccattttatttagaacaattttatcaacttgtgatcaatttttgacctgaaccttgtgtattttggttatacatataattact |
41308983 |
T |
|
| Q |
377 |
cacctttaacc |
387 |
Q |
| |
|
||||||||||| |
|
|
| T |
41308984 |
cacctttaacc |
41308994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 41322622 - 41322703
Alignment:
| Q |
20 |
agattttataaccttgaaatgaatcaagacatgcccataatggatgccaatggtgcctgagaggattgctgatatggaacta |
101 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||| |||||||||||| |
|
|
| T |
41322622 |
agattttgtaaccttgaaatgaatcaagacatgcccataatggatgccgatggttcccgagaggattgccgatatggaacta |
41322703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 179 - 275
Target Start/End: Original strand, 41323284 - 41323380
Alignment:
| Q |
179 |
acctcaataagccctctggttcaaatggagcaagacaccagcttggagcatcatcgcgaaatggaccctcacttggggaactaaatgtgcatgccta |
275 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||| ||||||||||| ||||||| |||||| || | ||| ||||| ||||||||| |||| |
|
|
| T |
41323284 |
acctcaacaagccctctggttcaaatggagcacgacaccaacttggagcatcttcgcgaattggaccttcgcctggagaactgaatgtgcattccta |
41323380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 27660016 - 27659943
Alignment:
| Q |
28 |
taaccttgaaatgaatcaagacatgcccataatggatgccaatggtgcctgagaggattgctgatatggaacta |
101 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||||||| || || ||||| |||||||| |||||| |
|
|
| T |
27660016 |
taaccttgaaatgaatcaagacatgtccatagtggatgccaatggtcccagataggatagctgatatagaacta |
27659943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University