View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12419_high_21 (Length: 391)
Name: NF12419_high_21
Description: NF12419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12419_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 39 - 377
Target Start/End: Complemental strand, 46612938 - 46612597
Alignment:
| Q |
39 |
gacagtgcccttgcttccacactgctaccaccttcccatgttgtcaaattaatagatcgttaagccgtaatagttttgatatgcgagttaaaatttcatc |
138 |
Q |
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| T |
46612938 |
gacagtgcccttgcttccacactgctaccaccttcccatgttgtcaaattaatagatcgttaagccgtaatagttttgatatgcgagttaaaatttcatc |
46612839 |
T |
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| Q |
139 |
taaacaaatccttcagtgaagaatagaattaaggaaacatggaaacttaaatagccacaacacattcgctaaataagattgttta-ttttttgtgaaact |
237 |
Q |
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| T |
46612838 |
taaacaaatccttcggt---gaatagaattaaggaaacatggaaacttaaatagccacaacacattcgctaaataagattgtttatttttttgtgaaact |
46612742 |
T |
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| Q |
238 |
tttagctttcaaatatctaaccataaacccagaccacgtaaatgaaaagtgtcaactcgtttctctacgc-----aaagacggtaaacacgcttatagtt |
332 |
Q |
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| T |
46612741 |
tttagctttcaaatacctaaccataaacccagaccacgtaaatgaaaagtgtcaacacctttctctacgcaaattaaagacggtaaatacgcttatagct |
46612642 |
T |
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| Q |
333 |
tatttggtaaagcatttttcacgacattcttgcgccccagtgcac |
377 |
Q |
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| T |
46612641 |
tatttgataaagcatttttcacgacattcttgcgccccaatgcac |
46612597 |
T |
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