View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12419_high_31 (Length: 302)

Name: NF12419_high_31
Description: NF12419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12419_high_31
NF12419_high_31
[»] chr8 (24 HSPs)
chr8 (1-286)||(24691769-24692056)
chr8 (14-72)||(31654679-31654737)
chr8 (14-79)||(6552721-6552786)
chr8 (14-79)||(33289260-33289325)
chr8 (14-78)||(54612-54676)
chr8 (14-78)||(2890162-2890226)
chr8 (14-78)||(7785778-7785842)
chr8 (14-78)||(15888352-15888416)
chr8 (14-78)||(39571203-39571267)
chr8 (5-71)||(13578913-13578980)
chr8 (14-78)||(3304278-3304342)
chr8 (14-78)||(7805699-7805763)
chr8 (14-78)||(12763654-12763718)
chr8 (14-78)||(25601000-25601064)
chr8 (14-78)||(32211363-32211427)
chr8 (14-78)||(43199354-43199418)
chr8 (14-78)||(44498187-44498251)
chr8 (14-72)||(7012237-7012295)
chr8 (14-72)||(12343146-12343204)
chr8 (21-67)||(15688041-15688087)
chr8 (14-67)||(27422256-27422309)
chr8 (12-53)||(33057658-33057699)
chr8 (24-72)||(28463617-28463665)
chr8 (14-78)||(32114475-32114539)
[»] chr1 (24 HSPs)
chr1 (1-78)||(11897106-11897184)
chr1 (14-88)||(44668084-44668157)
chr1 (14-79)||(27159357-27159422)
chr1 (14-78)||(11795999-11796063)
chr1 (14-78)||(14984903-14984967)
chr1 (14-78)||(17556819-17556883)
chr1 (14-78)||(25694385-25694449)
chr1 (14-78)||(31842795-31842859)
chr1 (14-78)||(39401966-39402030)
chr1 (8-78)||(47777481-47777552)
chr1 (14-72)||(9981713-9981771)
chr1 (20-78)||(16448180-16448238)
chr1 (14-78)||(1050954-1051018)
chr1 (14-78)||(11989847-11989911)
chr1 (14-78)||(26471065-26471129)
chr1 (14-78)||(34042762-34042826)
chr1 (14-78)||(47216699-47216763)
chr1 (14-78)||(47969761-47969825)
chr1 (8-78)||(12483628-12483699)
chr1 (1-47)||(16448139-16448186)
chr1 (14-53)||(23278026-23278065)
chr1 (1-67)||(37552193-37552260)
chr1 (14-72)||(44955212-44955270)
chr1 (21-78)||(11897054-11897111)
[»] chr5 (16 HSPs)
chr5 (14-88)||(11795234-11795308)
chr5 (14-78)||(6126890-6126954)
chr5 (14-78)||(9395416-9395480)
chr5 (14-78)||(17025690-17025754)
chr5 (14-78)||(36563538-36563602)
chr5 (14-78)||(37148955-37149019)
chr5 (14-78)||(41989407-41989471)
chr5 (14-57)||(583055-583098)
chr5 (14-72)||(23360008-23360066)
chr5 (22-78)||(13103098-13103154)
chr5 (14-78)||(37642020-37642084)
chr5 (14-72)||(966214-966272)
chr5 (12-53)||(2366363-2366404)
chr5 (22-66)||(13033125-13033169)
chr5 (22-78)||(21576020-21576076)
chr5 (14-78)||(26350350-26350414)
[»] chr7 (18 HSPs)
chr7 (5-89)||(38441516-38441601)
chr7 (5-78)||(7482281-7482355)
chr7 (14-78)||(1738447-1738511)
chr7 (14-78)||(7240815-7240879)
chr7 (14-78)||(9268822-9268886)
chr7 (14-78)||(46840926-46840990)
chr7 (14-79)||(94317-94382)
chr7 (14-67)||(38063924-38063977)
chr7 (22-78)||(22285773-22285829)
chr7 (14-78)||(23314139-23314203)
chr7 (14-78)||(31319399-31319463)
chr7 (14-66)||(36583461-36583513)
chr7 (14-53)||(1565754-1565793)
chr7 (1-67)||(7269416-7269483)
chr7 (22-73)||(33418450-33418501)
chr7 (14-72)||(4790314-4790372)
chr7 (22-67)||(36016207-36016252)
chr7 (14-78)||(28536751-28536815)
[»] chr4 (26 HSPs)
chr4 (14-78)||(51894582-51894646)
chr4 (5-78)||(3422116-3422190)
chr4 (14-79)||(6121892-6121957)
chr4 (14-79)||(47833677-47833742)
chr4 (14-67)||(52756741-52756794)
chr4 (1-78)||(17344265-17344343)
chr4 (14-79)||(46797791-46797856)
chr4 (14-78)||(3372187-3372251)
chr4 (14-78)||(3993042-3993106)
chr4 (14-78)||(4780361-4780425)
chr4 (14-78)||(5986942-5987006)
chr4 (14-78)||(20538686-20538750)
chr4 (14-78)||(33621862-33621926)
chr4 (14-78)||(42797798-42797862)
chr4 (14-78)||(47838617-47838681)
chr4 (14-78)||(48336329-48336393)
chr4 (14-78)||(53337436-53337500)
chr4 (14-53)||(7579376-7579415)
chr4 (14-49)||(50430447-50430482)
chr4 (24-78)||(17236864-17236918)
chr4 (14-72)||(43900615-43900673)
chr4 (1-66)||(45478144-45478210)
chr4 (14-78)||(3904683-3904747)
chr4 (14-66)||(24704436-24704488)
chr4 (14-78)||(38160372-38160436)
chr4 (22-78)||(41469766-41469822)
[»] chr2 (20 HSPs)
chr2 (14-78)||(41492896-41492960)
chr2 (14-78)||(3055624-3055688)
chr2 (14-78)||(6648519-6648583)
chr2 (14-78)||(9047755-9047819)
chr2 (14-78)||(12337937-12338001)
chr2 (14-78)||(13197710-13197774)
chr2 (14-78)||(15372292-15372356)
chr2 (14-78)||(15896908-15896972)
chr2 (14-78)||(37990013-37990077)
chr2 (14-78)||(38917522-38917586)
chr2 (14-78)||(41478639-41478703)
chr2 (14-78)||(44398752-44398816)
chr2 (5-79)||(16044316-16044391)
chr2 (5-78)||(37666610-37666684)
chr2 (14-67)||(16243794-16243847)
chr2 (14-67)||(44397613-44397666)
chr2 (14-78)||(13344550-13344614)
chr2 (1-72)||(16734835-16734907)
chr2 (14-56)||(27280020-27280062)
chr2 (22-78)||(30099182-30099238)
[»] chr3 (28 HSPs)
chr3 (14-67)||(42170357-42170410)
chr3 (5-72)||(9111500-9111568)
chr3 (14-78)||(10298045-10298109)
chr3 (14-78)||(19557052-19557116)
chr3 (14-78)||(34080030-34080094)
chr3 (14-78)||(40690996-40691060)
chr3 (14-78)||(48340463-48340527)
chr3 (14-78)||(49823381-49823445)
chr3 (14-72)||(17653778-17653836)
chr3 (14-72)||(37508987-37509045)
chr3 (14-51)||(5323273-5323310)
chr3 (14-67)||(8817397-8817450)
chr3 (14-67)||(22721997-22722050)
chr3 (14-79)||(38964458-38964523)
chr3 (8-72)||(42507361-42507426)
chr3 (14-78)||(2787832-2787896)
chr3 (14-78)||(8437491-8437555)
chr3 (14-66)||(33942944-33942996)
chr3 (14-78)||(51406739-51406803)
chr3 (14-53)||(44785421-44785460)
chr3 (19-49)||(2131743-2131773)
chr3 (14-72)||(4238660-4238718)
chr3 (16-78)||(9027142-9027204)
chr3 (20-78)||(9213516-9213574)
chr3 (19-53)||(14848282-14848316)
chr3 (22-79)||(21295325-21295382)
chr3 (92-136)||(30790775-30790819)
chr3 (22-78)||(46208104-46208160)
[»] chr6 (16 HSPs)
chr6 (14-78)||(2830401-2830465)
chr6 (14-78)||(6330181-6330245)
chr6 (14-78)||(8099596-8099660)
chr6 (14-78)||(8382969-8383033)
chr6 (14-78)||(9644762-9644826)
chr6 (14-78)||(9650779-9650843)
chr6 (14-78)||(11572145-11572209)
chr6 (14-78)||(13853593-13853657)
chr6 (14-78)||(26602389-26602453)
chr6 (21-80)||(8186440-8186499)
chr6 (14-67)||(8417804-8417857)
chr6 (14-78)||(6068632-6068696)
chr6 (96-152)||(20809087-20809143)
chr6 (22-78)||(28747134-28747190)
chr6 (14-72)||(35031007-35031065)
chr6 (14-67)||(33052805-33052858)
[»] scaffold1707 (1 HSPs)
scaffold1707 (14-66)||(1401-1453)
[»] scaffold0482 (1 HSPs)
scaffold0482 (14-78)||(12926-12990)
[»] scaffold0464 (1 HSPs)
scaffold0464 (14-78)||(6131-6195)
[»] scaffold0204 (1 HSPs)
scaffold0204 (14-78)||(23851-23915)
[»] scaffold0009 (1 HSPs)
scaffold0009 (14-78)||(49571-49635)


Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 24692056 - 24691769
Alignment:
Q  1 tatctgaactgaattttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagtaccatatttgttaatttatgtgt 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||    
T  24692056 tatctgaactgaattttaaccagatatatcaacttttgttgacccaaatttcttttaaaaataggaccggaacgagtaccatatttgttaatttatgtgt 24691957  T
Q  101 attttccaaatgtgtgtttgttgtagaagataaaaagtagaagagagatagatagaaacataaacaaagtgtcactttgagatgtctatattttgatttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  24691956 attttccaaatgtgtgtttgttgtagaagataaaaagtagaagagagatagatagaaacataaacaaagtgtcac-ttgagatgtctatattttgatttt 24691858  T
Q  201 caaataacacaagaaatgttcaagacttcaactattttgggt---caaaagatgttataaatttgtgctatgtgatgtgagattgtttt 286  Q
    |||||||||||||| |||||||||||||||||||||||||||   ||| ||||||||||||||||||||||||||||||||||||||||    
T  24691857 caaataacacaagagatgttcaagacttcaactattttgggtcaacaagagatgttataaatttgtgctatgtgatgtgagattgtttt 24691769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 31654679 - 31654737
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggag 72  Q
    ||||||| ||||||||||||||||||||||||||| |||||||| ||| ||||| ||||    
T  31654679 ttttaactagatacatcaacttttgttgacccaaaattcttttataaataggaccggag 31654737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 6552721 - 6552786
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagtac 79  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| ||||||    
T  6552721 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagtac 6552786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 33289325 - 33289260
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagtac 79  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| ||||||    
T  33289325 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagtac 33289260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 54676 - 54612
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  54676 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagta 54612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 2890226 - 2890162
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  2890226 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagta 2890162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 7785842 - 7785778
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  7785842 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagta 7785778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 15888416 - 15888352
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| || ||||||| |||||    
T  15888416 ttttaactagatacatcaacttttgttgacccaaaattctcttataaatagaactggagggagta 15888352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 39571267 - 39571203
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  39571267 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagta 39571203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 13578913 - 13578980
Alignment:
Q  5 tgaactgaatttt-aaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactgga 71  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||| |||| ||| ||| | |||||||    
T  13578913 tgaactgaatttttaactagatacatcaacttttgttgacccaaaattctcttataaatatgactgga 13578980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 3304342 - 3304278
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| || | ||| ||| ||||| |||| |||||    
T  3304342 ttttaactagatacatcaacttttgttgacccaaaattttcttataaataggaccggagggagta 3304278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 7805763 - 7805699
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||| ||||||||| |||| ||| ||| ||||| |||| |||||    
T  7805763 ttttaactagatacatcaacttttgctgacccaaaattctcttataaataggaccggagggagta 7805699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 12763718 - 12763654
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| || | ||| ||| ||||| |||| |||||    
T  12763718 ttttaactagatacatcaacttttgttgacccaaaattatcttataaataggaccggagggagta 12763654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 25601064 - 25601000
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| |||||||| |||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  25601064 ttttaactagatacattaacttttgttgacccaaaattctcttataaataggaccggagggagta 25601000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 32211427 - 32211363
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||| ||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  32211427 ttttaactagatacatcaatttttgttgacccaaaattctcttataaataggaccggagggagta 32211363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 43199418 - 43199354
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||| ||| |||| ||| ||| ||||| |||| |||||    
T  43199418 ttttaactagatacatcaacttttgttgaccaaaaattctcttataaataggaccggagggagta 43199354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 44498251 - 44498187
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| |||||||||||||||| |||||||||| |||| ||| ||| ||||| |||| |||||    
T  44498251 ttttaactagatacatcaacttttattgacccaaaattctcttataaataggaccggagggagta 44498187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 7012237 - 7012295
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggag 72  Q
    ||||||| ||||||||||||||||||||| ||||| |||| ||| ||| ||||| ||||    
T  7012237 ttttaactagatacatcaacttttgttgatccaaaattctcttataaataggaccggag 7012295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 12343204 - 12343146
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggag 72  Q
    ||||||| ||||||||||||||||||||||| ||| |||| ||| ||| ||||| ||||    
T  12343204 ttttaactagatacatcaacttttgttgaccaaaaattctcttataaataggaccggag 12343146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 15688087 - 15688041
Alignment:
Q  21 cagatacatcaacttttgttgacccaaatttcttttaaaaagaggac 67  Q
    ||||||||||||||||||||||||||| ||||| ||| ||| |||||    
T  15688087 cagatacatcaacttttgttgacccaactttctcttataaacaggac 15688041  T

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Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 27422256 - 27422309
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggac 67  Q
    ||||||||||||||||  | |||||||||||||||||||| ||| ||| |||||    
T  27422256 ttttaaccagatacattcatttttgttgacccaaatttctcttataaataggac 27422309  T

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Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 33057658 - 33057699
Alignment:
Q  12 aattttaaccagatacatcaacttttgttgacccaaatttct 53  Q
    ||||||||||||||||||||| ||||||||||| || |||||    
T  33057658 aattttaaccagatacatcaatttttgttgaccaaactttct 33057699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 28463665 - 28463617
Alignment:
Q  24 atacatcaacttttgttgacccaaatttcttttaaaaagaggactggag 72  Q
    |||||||||||||||||||||||| ||||| ||| ||| ||||| ||||    
T  28463665 atacatcaacttttgttgacccaactttctcttataaataggaccggag 28463617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 32114539 - 32114475
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||| ||||||||||||||| || | ||| ||| ||||| |||| |||||    
T  32114539 ttttaactagatacatcaatttttgttgacccaaaattttcttataaataggaccggagggagta 32114475  T

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Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 11897106 - 11897184
Alignment:
Q  1 tatctgaactgaatttt-aaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||| ||| ||||| |||| |||||    
T  11897106 tatctgaactgaatttttaaccggatacatcaacttttgttgacccaaatttctcttataaataggaccggagggagta 11897184  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 44668157 - 44668084
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagtaccatatttgt 88  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| ||||| |||||||||    
T  44668157 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagta-catatttgt 44668084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 27159422 - 27159357
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagtac 79  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| ||||||    
T  27159422 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagtac 27159357  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 11795999 - 11796063
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  11795999 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagta 11796063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 14984903 - 14984967
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  14984903 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagta 14984967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 17556819 - 17556883
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| |||||||||||||||||||||||||| ||||| ||| ||| ||||| |||| |||||    
T  17556819 ttttaactagatacatcaacttttgttgacccaagtttctcttataaataggaccggagggagta 17556883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 25694385 - 25694449
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  25694385 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagta 25694449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 31842859 - 31842795
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  31842859 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagta 31842795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 39402030 - 39401966
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  39402030 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagta 39401966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 47777552 - 47777481
Alignment:
Q  8 actgaatttt-aaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    |||||||||| ||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  47777552 actgaattttgaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagta 47777481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 9981713 - 9981771
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggag 72  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| ||||    
T  9981713 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggag 9981771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 16448180 - 16448238
Alignment:
Q  20 ccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    |||||||||||||||||||||||||||| ||||| ||| ||| ||||| |||| |||||    
T  16448180 ccagatacatcaacttttgttgacccaactttctcttataaataggaccggagggagta 16448238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 1050954 - 1051018
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||| ||||||||||| |||| ||| ||| ||||| |||| |||||    
T  1050954 ttttaactagatacatcaactttagttgacccaaaattctcttataaataggaccggagggagta 1051018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 11989847 - 11989911
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||||| ||||||||| |||| ||||| ||||||||||||| ||| ||||| |||| |||||    
T  11989847 ttttaaccaaatacatcaatttttattgactcaaatttcttttataaataggaccggagggagta 11989911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 26471129 - 26471065
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||| ||||| |||| ||| ||| ||||| |||| |||||    
T  26471129 ttttaactagatacatcaacttttgttgatccaaaattctcttataaataggaccggagggagta 26471065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 34042762 - 34042826
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| || || |||| |||||    
T  34042762 ttttaactagatacatcaacttttgttgacccaaaattctcttataaatagaaccggagggagta 34042826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 47216763 - 47216699
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| || || |||| |||||    
T  47216763 ttttaactagatacatcaacttttgttgacccaaaattctcttataaatagtaccggagggagta 47216699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 47969761 - 47969825
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||| ||||| || ||||| ||| ||||| |||| |||||    
T  47969761 ttttaactagatacatcaacttttgttgatccaaaattattttataaataggaccggagggagta 47969825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 12483699 - 12483628
Alignment:
Q  8 actgaatttt-aaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    |||||||||| ||| | ||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  12483699 actgaattttgaactaaatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagta 12483628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 16448186 - 16448139
Alignment:
Q  1 tatctgaactgaatttt-aaccagatacatcaacttttgttgacccaa 47  Q
    |||||| |||||||||| |||||||||||| |||||||||||||||||    
T  16448186 tatctggactgaattttgaaccagatacataaacttttgttgacccaa 16448139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 23278065 - 23278026
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttct 53  Q
    ||||||| ||||||||||||||||||||||||||| ||||    
T  23278065 ttttaactagatacatcaacttttgttgacccaaaattct 23278026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 37552193 - 37552260
Alignment:
Q  1 tatctgaactgaatttt-aaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggac 67  Q
    |||||| |||||||||| ||||||||||||  | |||||||||||||||||||| ||| ||| |||||    
T  37552193 tatctggactgaatttttaaccagatacattcatttttgttgacccaaatttctcttataaataggac 37552260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 44955270 - 44955212
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggag 72  Q
    ||||||| ||||||||||||||||||||||| ||| |||| ||| ||| ||||| ||||    
T  44955270 ttttaactagatacatcaacttttgttgacctaaaattctcttataaataggaccggag 44955212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 11897111 - 11897054
Alignment:
Q  21 cagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    |||||||||||||||||||||||| || ||||| ||| ||| ||||| |||| |||||    
T  11897111 cagatacatcaacttttgttgacctaactttctcttataaataggaccggagggagta 11897054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 88
Target Start/End: Original strand, 11795234 - 11795308
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagtaccatatttgt 88  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| |||||||||| |||||  ||||||||    
T  11795234 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggactggagggagtataatatttgt 11795308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 6126890 - 6126954
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  6126890 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagta 6126954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 9395416 - 9395480
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  9395416 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagta 9395480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 17025690 - 17025754
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  17025690 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagta 17025754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 36563602 - 36563538
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  36563602 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagta 36563538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 37149019 - 37148955
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  37149019 ttttaactagatacatcaacttttgttgacccaaaattctattataaataggaccggagggagta 37148955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 41989471 - 41989407
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  41989471 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagta 41989407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 583055 - 583098
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttctttta 57  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||    
T  583055 ttttaactagatacatcaacttttgttgacccaaaattctttta 583098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 23360008 - 23360066
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggag 72  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| ||||    
T  23360008 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggag 23360066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 13103098 - 13103154
Alignment:
Q  22 agatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  13103098 agatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagta 13103154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 37642020 - 37642084
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| |||||||||||||||| |||||||||| |||| ||| ||| ||||| |||| |||||    
T  37642020 ttttaactagatacatcaacttttattgacccaaaattctcttataaataggaccggagggagta 37642084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 966214 - 966272
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggag 72  Q
    ||||||||||||||||  | ||||||||| |||||||||| ||| ||| ||||||||||    
T  966214 ttttaaccagatacattcatttttgttgatccaaatttctcttataaataggactggag 966272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 2366404 - 2366363
Alignment:
Q  12 aattttaaccagatacatcaacttttgttgacccaaatttct 53  Q
    ||||||||||| |||||| |||| ||||||||||||||||||    
T  2366404 aattttaaccaaatacatgaactcttgttgacccaaatttct 2366363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 13033125 - 13033169
Alignment:
Q  22 agatacatcaacttttgttgacccaaatttcttttaaaaagagga 66  Q
    ||||||||||||||||||||||||||| |||| ||| ||| ||||    
T  13033125 agatacatcaacttttgttgacccaaaattctcttataaatagga 13033169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 21576020 - 21576076
Alignment:
Q  22 agatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||||||||||||||||| ||||| |||| ||| ||| ||||| |||| |||||    
T  21576020 agatacatcaacttttgttgatccaaaattctcttataaataggaccggagggagta 21576076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 26350414 - 26350350
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| |||||||||||||||| ||||  |||| |||||||| ||| ||||| |||| |||||    
T  26350414 ttttaactagatacatcaacttttattgattcaaaattcttttataaataggaccggagggagta 26350350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 5 - 89
Target Start/End: Original strand, 38441516 - 38441601
Alignment:
Q  5 tgaactgaatttt-aaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagtaccatatttgtt 89  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| ||||  ||||| |||||||||    
T  38441516 tgaactgaatttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggaggaagtactatatttgtt 38441601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 7482281 - 7482355
Alignment:
Q  5 tgaactgaatttt-aaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  7482281 tgaactgaatttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagta 7482355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 1738511 - 1738447
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  1738511 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagta 1738447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 7240815 - 7240879
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  7240815 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagta 7240879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 9268822 - 9268886
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  9268822 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagta 9268886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 46840926 - 46840990
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  46840926 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagta 46840990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 94382 - 94317
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagtac 79  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||  |||| ||||||    
T  94382 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggatcggagggagtac 94317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 38063977 - 38063924
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggac 67  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| |||||    
T  38063977 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggac 38063924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 22285773 - 22285829
Alignment:
Q  22 agatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  22285773 agatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagta 22285829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 23314203 - 23314139
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||| ||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  23314203 ttttaactagatatatcaacttttgttgacccaaaattctcttataaataggaccggagggagta 23314139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 31319463 - 31319399
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| || || |||| |||||    
T  31319463 ttttaactagatacatcaacttttgttgacccaaaattctcttataaatagaaccggagggagta 31319399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 36583461 - 36583513
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagagga 66  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||    
T  36583461 ttttaactagatacatcaacttttgttgacccaaaattctcttataaatagga 36583513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 1565793 - 1565754
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttct 53  Q
    ||||||| ||||||||||||||||||||||||||| ||||    
T  1565793 ttttaactagatacatcaacttttgttgacccaaaattct 1565754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 7269483 - 7269416
Alignment:
Q  1 tatctgaactgaatttt-aaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggac 67  Q
    ||||| ||||||||||| |||||||| |||||||||||||| |||||| ||||| ||| ||| |||||    
T  7269483 tatctaaactgaatttttaaccagatgcatcaacttttgttaacccaactttctcttataaataggac 7269416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 33418450 - 33418501
Alignment:
Q  22 agatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagc 73  Q
    ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||||    
T  33418450 agatacatcaacttttgttgacccaaaattctcttataaataggaccggagc 33418501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 4790314 - 4790372
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggag 72  Q
    ||||||| |||||||||||||||| |||||||||| |||| ||| ||| ||||| ||||    
T  4790314 ttttaactagatacatcaacttttattgacccaaaattctcttataaataggaccggag 4790372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 36016252 - 36016207
Alignment:
Q  22 agatacatcaacttttgttgacccaaatttcttttaaaaagaggac 67  Q
    ||||||||||||||||||||||||||| |||| ||| ||| |||||    
T  36016252 agatacatcaacttttgttgacccaaaattctcttataaataggac 36016207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 28536815 - 28536751
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| |||||||||||||||| |||| ||||| |||| ||| ||| ||||| |||| |||||    
T  28536815 ttttaactagatacatcaacttttattgatccaaaattctcttataaataggaccggagggagta 28536751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 51894646 - 51894582
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||||||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  51894646 ttttaaccagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagta 51894582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 3422116 - 3422190
Alignment:
Q  5 tgaactgaatttt-aaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  3422116 tgaactgaatttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagta 3422190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 6121957 - 6121892
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagtac 79  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| ||||||    
T  6121957 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagtac 6121892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 47833677 - 47833742
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagtac 79  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| ||||||    
T  47833677 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagtac 47833742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 52756741 - 52756794
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggac 67  Q
    ||||||| ||||||||||||||||||||||||||| |||||||| ||| |||||    
T  52756741 ttttaactagatacatcaacttttgttgacccaaaattcttttataaataggac 52756794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 17344265 - 17344343
Alignment:
Q  1 tatctgaactgaatttt-aaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||||||||||||| || | |||||||||||||||||||| |||||||||| ||| ||| | || ||||| |||||    
T  17344265 tatctgaactgaatttttaatcggatacatcaacttttgttgatccaaatttctcttataaataagattggagggagta 17344343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 46797791 - 46797856
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagtac 79  Q
    ||||||| ||||| ||||||||||||||||||||| |||| ||| ||| ||||| |||| ||||||    
T  46797791 ttttaactagatatatcaacttttgttgacccaaaattctcttataaataggaccggagggagtac 46797856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 3372187 - 3372251
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| || | ||| ||| ||||| |||| |||||    
T  3372187 ttttaactagatacatcaacttttgttgacccaaaattatcttataaataggaccggagggagta 3372251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 3993042 - 3993106
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| | ||| |||| |||||    
T  3993042 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataagaccggagggagta 3993106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 4780361 - 4780425
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    |||||| ||||||||| |||||||||||||| |||||||| ||| ||| ||||| |||| |||||    
T  4780361 ttttaatcagatacattaacttttgttgaccaaaatttctcttataaataggaccggagggagta 4780425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 5986942 - 5987006
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| | ||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  5986942 ttttaactaaatacatcaacttttgttgacccaaaattctcttataaataggaccggagagagta 5987006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 20538750 - 20538686
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||| ||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  20538750 ttttaactagatacatcaaattttgttgacccaaaattctcttataaataggaccggagggagta 20538686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 33621862 - 33621926
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| || | ||| ||| ||||| |||| |||||    
T  33621862 ttttaactagatacatcaacttttgttgacccaaaattatcttataaataggaccggagggagta 33621926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 42797798 - 42797862
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||| ||| |||| ||| ||| ||||| |||| |||||    
T  42797798 ttttaactagatacatcaacttttgttgacctaaaattctcttataaataggaccggagggagta 42797862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 47838681 - 47838617
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||| ||| |||| ||| ||| ||||| |||| |||||    
T  47838681 ttttaactagatacatcaacttttgttgaccaaaaattctcttataaataggaccggagggagta 47838617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 48336329 - 48336393
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| || | ||| ||| ||||| |||| |||||    
T  48336329 ttttaactagatacatcaacttttgttgacccaaaattttcttataaataggaccggagggagta 48336393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 53337436 - 53337500
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| |||||||||||||||| |||||||||| |||| ||| ||| ||||| |||| |||||    
T  53337436 ttttaactagatacatcaacttttattgacccaaaattctcttataaataggaccggagggagta 53337500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 7579376 - 7579415
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttct 53  Q
    ||||||| ||||||||||||||||||||||||||| ||||    
T  7579376 ttttaactagatacatcaacttttgttgacccaaaattct 7579415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 50430482 - 50430447
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaat 49  Q
    ||||||||||||||||||| ||||||||||||||||    
T  50430482 ttttaaccagatacatcaatttttgttgacccaaat 50430447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 17236864 - 17236918
Alignment:
Q  24 atacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    |||||||||||||||||||||||||||| | ||| ||| ||||| |||| |||||    
T  17236864 atacatcaacttttgttgacccaaatttttcttataaataggaccggagagagta 17236918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 43900615 - 43900673
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggag 72  Q
    ||||||| ||||||||||||||||||| ||||||| |||| ||| ||| ||||| ||||    
T  43900615 ttttaactagatacatcaacttttgttaacccaaaattctcttataaataggaccggag 43900673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 45478144 - 45478210
Alignment:
Q  1 tatctgaactgaatttt-aaccagatacatcaacttttgttgacccaaatttcttttaaaaagagga 66  Q
    ||||| ||||||||||| |||| ||||||||||||||| |||||||| |||||| ||| ||| ||||    
T  45478144 tatctcaactgaatttttaaccggatacatcaacttttattgacccacatttctcttataaatagga 45478210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 3904747 - 3904683
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| | ||||||||| ||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  3904747 ttttaactaaatacatcaatttttgttgacccaaaattctcttataaataggaccggagggagta 3904683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 24704436 - 24704488
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagagga 66  Q
    ||||||| |||||||| |||||||||||||||||| |||| ||| ||| ||||    
T  24704436 ttttaactagatacattaacttttgttgacccaaaattctcttataaatagga 24704488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 38160436 - 38160372
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    |||||| |||||||||||| ||||||||||| |||| ||| ||| ||| | |||||||| |||||    
T  38160436 ttttaatcagatacatcaatttttgttgacctaaatctctcttataaatatgactggagagagta 38160372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 41469822 - 41469766
Alignment:
Q  22 agatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||||||||||||||||||| ||| |||| ||| ||| ||||| |||| |||||    
T  41469822 agatacatcaacttttgttgaccaaaaattctcttataaataggaccggagggagta 41469766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 41492960 - 41492896
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| |||||||||||||||||||||||||||||||| ||| ||| ||||| |||| |||||    
T  41492960 ttttaactagatacatcaacttttgttgacccaaatttctcttataaataggaccggagggagta 41492896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 3055624 - 3055688
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  3055624 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagta 3055688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 6648583 - 6648519
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  6648583 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagta 6648519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 9047819 - 9047755
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  9047819 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagta 9047755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 12338001 - 12337937
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  12338001 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagta 12337937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 13197774 - 13197710
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  13197774 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagta 13197710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 15372292 - 15372356
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  15372292 ttttaacgagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagta 15372356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 15896908 - 15896972
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  15896908 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagta 15896972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 37990077 - 37990013
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  37990077 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagta 37990013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 38917586 - 38917522
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  38917586 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagta 38917522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 41478703 - 41478639
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  41478703 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagta 41478639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 44398752 - 44398816
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  44398752 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagta 44398816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 79
Target Start/End: Complemental strand, 16044391 - 16044316
Alignment:
Q  5 tgaactgaatttt-aaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagtac 79  Q
    ||||||||||||| ||| ||||||||||||||| ||||||||||| |||| ||| ||| ||||| |||| ||||||    
T  16044391 tgaactgaatttttaactagatacatcaactttagttgacccaaaattctcttataaataggaccggagggagtac 16044316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 37666684 - 37666610
Alignment:
Q  5 tgaactgaatttt-aaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||||||||| ||| ||||||||||||||| ||||||||||| |||| ||| ||| ||||| |||| |||||    
T  37666684 tgaactgaatttttaactagatacatcaactttagttgacccaaaattctcttataaataggaccggagggagta 37666610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 16243847 - 16243794
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggac 67  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| |||||    
T  16243847 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggac 16243794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 44397613 - 44397666
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggac 67  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| |||||    
T  44397613 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggac 44397666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 13344550 - 13344614
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||| ||||| |||| ||| ||| ||||| |||| |||||    
T  13344550 ttttaactagatacatcaacttttgttgatccaaaattctcttataaataggaccggagggagta 13344614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 16734835 - 16734907
Alignment:
Q  1 tatctgaactgaatttt-aaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggag 72  Q
    |||||| |||||||||| ||||| ||||||||||||||||| || ||| ||||| ||| ||| ||||||||||    
T  16734835 tatctggactgaatttttaaccaaatacatcaacttttgtttactcaactttctcttataaataggactggag 16734907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 27280020 - 27280062
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttctttt 56  Q
    |||||||||||||||| |||||||||||||| |||||| ||||    
T  27280020 ttttaaccagatacattaacttttgttgacctaaatttttttt 27280062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 30099238 - 30099182
Alignment:
Q  22 agatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||||||||||||||||||||||| |||| | | ||| ||||| |||| |||||    
T  30099238 agatacatcaacttttgttgacccaaaattctctaataaataggaccggagggagta 30099182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 42170410 - 42170357
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggac 67  Q
    ||||||||||||||||||||||||||||||||||| |||| ||| ||| |||||    
T  42170410 ttttaaccagatacatcaacttttgttgacccaaaattctcttataaataggac 42170357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 9111568 - 9111500
Alignment:
Q  5 tgaactgaatttt-aaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggag 72  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| ||||    
T  9111568 tgaactgaatttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggag 9111500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 10298045 - 10298109
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  10298045 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagta 10298109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 19557116 - 19557052
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  19557116 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagta 19557052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 34080094 - 34080030
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  34080094 ttttaacaagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagta 34080030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 40691060 - 40690996
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  40691060 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagta 40690996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 48340463 - 48340527
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  48340463 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagta 48340527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 49823445 - 49823381
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  49823445 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagta 49823381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 17653778 - 17653836
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggag 72  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| ||||    
T  17653778 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggag 17653836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 37508987 - 37509045
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggag 72  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| ||||    
T  37508987 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggag 37509045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 5323273 - 5323310
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaattt 51  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  5323273 ttttaaccaaatacatcaacttttgttgacccaaattt 5323310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 8817450 - 8817397
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggac 67  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| |||||    
T  8817450 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggac 8817397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 22721997 - 22722050
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggac 67  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| |||||    
T  22721997 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggac 22722050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 38964458 - 38964523
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagtac 79  Q
    ||||||| ||||||||||||||||||||||| ||| |||| ||| ||| ||||| |||| ||||||    
T  38964458 ttttaactagatacatcaacttttgttgaccaaaaattctcttataaataggaccggagggagtac 38964523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 42507426 - 42507361
Alignment:
Q  8 actgaatttt-aaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggag 72  Q
    |||||||||| ||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| ||||    
T  42507426 actgaattttgaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggag 42507361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 2787896 - 2787832
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||| ||||||||| |||| ||| ||| ||||| |||| |||||    
T  2787896 ttttaactagatacatcaacttttgctgacccaaaattctcttataaataggaccggagggagta 2787832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 8437491 - 8437555
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| |||||||||||||||||||||| |||| |||| ||| ||| ||||| |||| |||||    
T  8437491 ttttaactagatacatcaacttttgttgactcaaaattctcttataaataggaccggagggagta 8437555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 33942996 - 33942944
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagagga 66  Q
    ||||||| |||||||||||||||||||||||||| ||||| ||| ||| ||||    
T  33942996 ttttaactagatacatcaacttttgttgacccaagtttctcttataaatagga 33942944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 51406739 - 51406803
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||| ||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  51406739 ttttaactagatacatcaatttttgttgacccaaaattctcttataaataggaccggagggagta 51406803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 44785460 - 44785421
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttct 53  Q
    ||||||| ||||||||||||||||||||||||||| ||||    
T  44785460 ttttaactagatacatcaacttttgttgacccaaaattct 44785421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 49
Target Start/End: Original strand, 2131743 - 2131773
Alignment:
Q  19 accagatacatcaacttttgttgacccaaat 49  Q
    |||||||||||||||||||||||||||||||    
T  2131743 accagatacatcaacttttgttgacccaaat 2131773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 4238660 - 4238718
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggag 72  Q
    ||||||| ||||||||||||||||||||||| ||| |||| ||| ||| ||||| ||||    
T  4238660 ttttaactagatacatcaacttttgttgaccaaaaattctcttataaataggaccggag 4238718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 9027204 - 9027142
Alignment:
Q  16 ttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    |||||| ||||||||||||||||||||||||| ||| | ||| ||| ||||| |||| |||||    
T  9027204 ttaacctgatacatcaacttttgttgacccaactttatcttataaataggaccggagggagta 9027142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 9213574 - 9213516
Alignment:
Q  20 ccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||||||||||||||||||||  |||| ||||||| ||| ||||| |||| |||||    
T  9213574 ccagatacatcaacttttgttgactaaaatgtcttttataaataggaccggagggagta 9213516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 14848316 - 14848282
Alignment:
Q  19 accagatacatcaacttttgttgacccaaatttct 53  Q
    ||||||||||||||||||||||||||||| |||||    
T  14848316 accagatacatcaacttttgttgacccaattttct 14848282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 21295382 - 21295325
Alignment:
Q  22 agatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagtac 79  Q
    ||||||||||||||||||||||| ||| |||| ||| ||| ||||| |||| ||||||    
T  21295382 agatacatcaacttttgttgacctaaaattctcttataaataggaccggagggagtac 21295325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 136
Target Start/End: Original strand, 30790775 - 30790819
Alignment:
Q  92 tttatgtgtattttccaaatgtgtgtttgttgtagaagataaaaa 136  Q
    ||||||||||||||  ||||||||||  |||||||||||||||||    
T  30790775 tttatgtgtattttttaaatgtgtgtaagttgtagaagataaaaa 30790819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 46208104 - 46208160
Alignment:
Q  22 agatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||||||||||||||||||| ||| |||| ||| ||| ||||| |||| |||||    
T  46208104 agatacatcaacttttgttgacctaaaattctcttataaataggaccggagggagta 46208160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 2830401 - 2830465
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  2830401 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagta 2830465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 6330181 - 6330245
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  6330181 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagta 6330245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 8099596 - 8099660
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  8099596 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagta 8099660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 8383033 - 8382969
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  8383033 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagta 8382969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 9644762 - 9644826
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  9644762 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagta 9644826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 9650779 - 9650843
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  9650779 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagta 9650843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 11572209 - 11572145
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  11572209 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagta 11572145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 13853657 - 13853593
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  13853657 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagta 13853593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 26602389 - 26602453
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  26602389 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagta 26602453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 8186440 - 8186499
Alignment:
Q  21 cagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagtacc 80  Q
    |||||||||||||||||||||| |||||||||||||| ||| ||||| || | |||||||    
T  8186440 cagatacatcaacttttgttgatccaaatttcttttataaataggaccggggggagtacc 8186499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 8417857 - 8417804
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggac 67  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| |||||    
T  8417857 ttttaactagatacatcaacttttgttgacccaaaattctcttataaataggac 8417804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 6068632 - 6068696
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| |||||||||||||||||||||| |||| |||| ||| ||| ||||| |||| |||||    
T  6068632 ttttaactagatacatcaacttttgttgactcaaaattctcttataaataggaccggagggagta 6068696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 152
Target Start/End: Original strand, 20809087 - 20809143
Alignment:
Q  96 tgtgtattttccaaatgtgtgtttgttgtagaagataaaaagtagaagagagataga 152  Q
    ||||||||||  |||||||||| ||||||| |||||||||||||  |||||||||||    
T  20809087 tgtgtattttttaaatgtgtgtatgttgtaaaagataaaaagtaagagagagataga 20809143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 28747190 - 28747134
Alignment:
Q  22 agatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||||||||||||||||||||||| |||| ||| ||| ||||||| || |||||    
T  28747190 agatacatcaacttttgttgacccaaaattctcttataaataggactgaagggagta 28747134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 35031065 - 35031007
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggag 72  Q
    ||||||| ||||||||||| ||||||||||||||| |||| ||| ||| ||||| ||||    
T  35031065 ttttaactagatacatcaatttttgttgacccaaaattctcttataaataggaccggag 35031007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 33052858 - 33052805
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggac 67  Q
    ||||||| |||||||||||||||| |||||||||| |||| ||| ||| |||||    
T  33052858 ttttaactagatacatcaacttttattgacccaaaattctcttataaataggac 33052805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1707 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1707
Description:

Target: scaffold1707; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 1401 - 1453
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagagga 66  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||    
T  1401 ttttaactagatacatcaacttttgttgacccaaaattctcttataaatagga 1453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 12926 - 12990
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||| ||||||||| |||| ||| ||| ||||| |||| |||||    
T  12926 ttttaactagatacatcaacttttgctgacccaaaattctcttataaataggaccggagggagta 12990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 6195 - 6131
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| || | ||| ||| ||||| |||| |||||    
T  6195 ttttaactagatacatcaacttttgttgacccaaaattttcttataaataggaccggagggagta 6131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 23851 - 23915
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| ||||||||||||||||||||||||||| || | ||| ||| ||||| |||| |||||    
T  23851 ttttaactagatacatcaacttttgttgacccaaaattttcttataaataggaccggagggagta 23915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 49571 - 49635
Alignment:
Q  14 ttttaaccagatacatcaacttttgttgacccaaatttcttttaaaaagaggactggagcgagta 78  Q
    ||||||| | ||||||||||||||||||||||||| |||| ||| ||| ||||| |||| |||||    
T  49571 ttttaactaaatacatcaacttttgttgacccaaaattctcttataaataggaccggagggagta 49635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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