View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12419_high_32 (Length: 298)

Name: NF12419_high_32
Description: NF12419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12419_high_32
NF12419_high_32
[»] chr7 (7 HSPs)
chr7 (64-166)||(29340669-29340771)
chr7 (18-61)||(29340599-29340642)
chr7 (111-180)||(33745589-33745658)
chr7 (88-129)||(42602636-42602677)
chr7 (141-189)||(1505667-1505715)
chr7 (140-180)||(26040253-26040293)
chr7 (216-244)||(29340806-29340834)
[»] chr2 (2 HSPs)
chr2 (67-166)||(37828601-37828700)
chr2 (69-129)||(4865538-4865598)
[»] chr4 (1 HSPs)
chr4 (92-180)||(20821763-20821851)
[»] chr1 (1 HSPs)
chr1 (88-166)||(30892089-30892167)
[»] chr5 (1 HSPs)
chr5 (112-189)||(17476097-17476174)


Alignment Details
Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 64 - 166
Target Start/End: Original strand, 29340669 - 29340771
Alignment:
Q  64 acttcggtaaggtgaagtgtatcgtacatgagttaacttactctgtgttataacctacatgagttattttacggtgagattataacctatatgagttaac 163  Q
    ||||||||||  |||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||| ||||||||||    
T  29340669 acttcggtaaactgaagtatatcgtatatgagttaacttactctgtattataacctacatgagttattttacggtggggttataacctacatgagttaac 29340768  T
Q  164 tca 166  Q
    |||    
T  29340769 tca 29340771  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 29340599 - 29340642
Alignment:
Q  18 aactttgggtccacatttatttttccttttcccaaacttcaagg 61  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  29340599 aactttgggtccacatttatttttccttttcccaaacttcaagg 29340642  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 180
Target Start/End: Original strand, 33745589 - 33745658
Alignment:
Q  111 ttataacctacatgagttattttacggtgagattataacctatatgagttaactcatgttggattataac 180  Q
    ||||||||||||||||||| |||||| |||  ||||||| |||||||||||| | | |||||||||||||    
T  33745589 ttataacctacatgagttaatttacgctgaagttataacatatatgagttaatttacgttggattataac 33745658  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 129
Target Start/End: Original strand, 42602636 - 42602677
Alignment:
Q  88 tacatgagttaacttactctgtgttataacctacatgagtta 129  Q
    |||||||||||||| || ||| ||||||||||||||||||||    
T  42602636 tacatgagttaactcacgctgagttataacctacatgagtta 42602677  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 189
Target Start/End: Original strand, 1505667 - 1505715
Alignment:
Q  141 gattataacctatatgagttaactcatgttggattataacattcgtgag 189  Q
    |||||||||||| ||||||||||||| |||| |||||||| | ||||||    
T  1505667 gattataacctacatgagttaactcacgttgaattataacctacgtgag 1505715  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 26040253 - 26040293
Alignment:
Q  140 agattataacctatatgagttaactcatgttggattataac 180  Q
    ||||||||||||| |||||||||||||| ||| ||||||||    
T  26040253 agattataacctacatgagttaactcatattgaattataac 26040293  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 244
Target Start/End: Original strand, 29340806 - 29340834
Alignment:
Q  216 gttgaatttaacacatgtgtgacctaaat 244  Q
    |||||||||||||||||||||||||||||    
T  29340806 gttgaatttaacacatgtgtgacctaaat 29340834  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 166
Target Start/End: Complemental strand, 37828700 - 37828601
Alignment:
Q  67 tcggtaaggtgaagtgtatcgtacatgagttaacttactctgtgttataacctacatgagttattttacggtgagattataacctatatgagttaactca 166  Q
    |||||||| |||| | || | |||||||||||||| || ||| ||||||||||||||||||||  | ||| || |||||||| ||| |||||||||||||    
T  37828700 tcggtaagctgaaatataacctacatgagttaactcacgctgggttataacctacatgagttaactcacgctgggattataagctacatgagttaactca 37828601  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 129
Target Start/End: Original strand, 4865538 - 4865598
Alignment:
Q  69 ggtaaggtgaagtgtatcgtacatgagttaacttactctgtgttataacctacatgagtta 129  Q
    |||||| |||||| || | |||||||||||||| || ||| |||||||||||| |||||||    
T  4865538 ggtaagctgaagtataacctacatgagttaactcacgctgggttataacctacttgagtta 4865598  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 92 - 180
Target Start/End: Original strand, 20821763 - 20821851
Alignment:
Q  92 tgagttaacttactctgtgttataacctacatgagttattttacggtgagattataacctatatgagttaactcatgttggattataac 180  Q
    ||||||||||||| ||  ||||||||||||||||||||  | |||  |   |||||||||| ||||||||||||| |||||||||||||    
T  20821763 tgagttaacttacgcttagttataacctacatgagttaactcacgccggtgttataacctacatgagttaactcacgttggattataac 20821851  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 166
Target Start/End: Original strand, 30892089 - 30892167
Alignment:
Q  88 tacatgagttaacttactctgtgttataacctacatgagttattttacggtgagattataacctatatgagttaactca 166  Q
    ||||||||||||||||| ||| ||||||||||||||||||||  | ||| |  | ||||||| || |||||||||||||    
T  30892089 tacatgagttaacttacgctgggttataacctacatgagttaactcacgcttgggttataacatacatgagttaactca 30892167  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 189
Target Start/End: Complemental strand, 17476174 - 17476097
Alignment:
Q  112 tataacctacatgagttattttacggtgagattataacctatatgagttaactcatgttggattataacattcgtgag 189  Q
    |||||||||||||| |||  | ||| |||| |||||||||| ||||||||||||| | ||||||||||| | ||||||    
T  17476174 tataacctacatgaattaactcacgttgaggttataacctacatgagttaactcacgctggattataacctacgtgag 17476097  T

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