View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12419_high_39 (Length: 260)
Name: NF12419_high_39
Description: NF12419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12419_high_39 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 1425773 - 1425545
Alignment:
| Q |
19 |
aacctacatctaaaccttctaatacttctatcaagttacataatgatgataatacacattggtgatattcatacttacagaagactcattcattgaattt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
1425773 |
aacctacatctaaaccttctaatacttccatcaagttacataatgatgataatacacattggtgatattcatacttacaaaagacttattcattgaattc |
1425674 |
T |
|
| Q |
119 |
atcatctcacactacataactagatatcatgcaacaacttggctaattcttatccaaacccacaaatattcattatagtactgcttgtagagttttcaaa |
218 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1425673 |
attatctcacattacataactagatatcatgcaacaacttggctaattcttatccaaacccacaaatattcattatagtactgcttgtagagttttcaaa |
1425574 |
T |
|
| Q |
219 |
taccttaagcattggcttgttcatggtct |
247 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
1425573 |
taccttaagcattggcttgttcatggtct |
1425545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 1447864 - 1447637
Alignment:
| Q |
19 |
aacctacatctaaaccttctaatacttctatcaagttacataatgatgataataca--cattggtgatattcatacttacagaagactcattcattgaat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
1447864 |
aacctacatctaaaccttctaatacttctatcaagttacataatgatgataatacacccattggtgatattcctacttacaaaagactcattcattgaat |
1447765 |
T |
|
| Q |
117 |
ttatcatctcacactacataactagatatca--tgc-------aacaacttggctaattcttatccaaacccacaaatattcattatagtactgcttgta |
207 |
Q |
| |
|
| | |||||||| ||||||||||||||||| | | |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
1447764 |
tcagtatctcacattacataactagatatcaccttcatcagttaacaacttagctaattcttatccaaacccacaaatattcattgtagtactgcttgta |
1447665 |
T |
|
| Q |
208 |
gagttttcaaataccttaagcattggct |
235 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
1447664 |
gagttttcaaataccttaagcattggct |
1447637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 1470340 - 1470229
Alignment:
| Q |
18 |
aaacctacatctaaaccttctaatacttctatcaagttacataatgatgataataca--cattggtgatattcatacttacagaagactcattcattgaa |
115 |
Q |
| |
|
||||||| ||| | ||||| ||||||||| ||||||||| ||||||||||||||||| |||||||||||||| |||||||| ||||| | ||||||||| |
|
|
| T |
1470340 |
aaacctaaatcaagaccttataatacttccatcaagttatataatgatgataatacacccattggtgatattcctacttacaaaagaccccttcattgaa |
1470241 |
T |
|
| Q |
116 |
tttatcatctca |
127 |
Q |
| |
|
|| || |||||| |
|
|
| T |
1470240 |
ttcattatctca |
1470229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University