View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12419_high_8 (Length: 573)
Name: NF12419_high_8
Description: NF12419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12419_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-131; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 10 - 310
Target Start/End: Complemental strand, 32944920 - 32944622
Alignment:
| Q |
10 |
aagcagagagaaccggatagtttttgcaagcatataatcacactctttgtctctaagacgcatccaaagtcctaccttattaagcgacaagaagatcgag |
109 |
Q |
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| T |
32944920 |
aagcagatagaaccggatagtttttgcaagcatataatcacactct--gtctctaagacgcattcaaagtcctaccttattaagcgacaagaagatcaag |
32944823 |
T |
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| Q |
110 |
acatatatattgcatttataccttctaggagtcggttttatccattagtacaaagctgtaaaagtcgatccatgtggatcaaaattatagttgattgtac |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||| ||||| || ||| |
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| T |
32944822 |
acatatatattgcatttataccttctaggagtcggttttatccattagtacaaagttgtaaaagtcgacccctgtggatcaaaattagagttggttatac |
32944723 |
T |
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| Q |
210 |
taactgaacgaatgacattgaaacatatattttaatattaatgacatgaaaatgagatgtctaacaacgataccaaataaacaaatgtcacgtataatcc |
309 |
Q |
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| T |
32944722 |
taattgaacgaatgacattgaaacatatattttaatattaatgacatggaaatgagatgtctaacaacgatatcaaataaacaaatgtcacatataatcc |
32944623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 396 - 554
Target Start/End: Complemental strand, 32943437 - 32943279
Alignment:
| Q |
396 |
ttgtgtgagaaccggtccggcccgaccggatatatatgtgggagtaagatacttacgcgtaattgtactttctctcttcagatacgcgttccgttctttt |
495 |
Q |
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| T |
32943437 |
ttgtgtgagaaccggtccggcccgaccggatatatatgtgggagtaagatacttacgcgtaattgtactttctctcttcagatacgcgttccgttctttt |
32943338 |
T |
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| Q |
496 |
cgattacccaaacctaagcctcagaaccaaaaactcgctagggttcataatcgcgtttc |
554 |
Q |
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| T |
32943337 |
cgattacccaaacctaagcctcagaaccaaaaactcgctagggttcataatcgcgtttc |
32943279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 310 - 352
Target Start/End: Complemental strand, 32944575 - 32944533
Alignment:
| Q |
310 |
atgggatcgaaaaactgaattttaaaaacgagtatcaaaagtt |
352 |
Q |
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| T |
32944575 |
atgggatcgaaaaactgaattttaaaaacgagtatcaaaagtt |
32944533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 344 - 382
Target Start/End: Complemental strand, 32943516 - 32943478
Alignment:
| Q |
344 |
tcaaaagttaacttaattacaaaaacgggaatcaaaatt |
382 |
Q |
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| T |
32943516 |
tcaaaagttaacttaattacaaaaacgggaatcaaaatt |
32943478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 38246346 - 38246517
Alignment:
| Q |
17 |
gagaaccggatagtttttgcaagcatataatcacactctttgtctctaagacgcatccaaagtcctaccttattaagcgacaagaagatcgagacatata |
116 |
Q |
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||||||| | || |||||||||||||| ||| || ||||| | ||||||||| || | |||||||||||||||||||||| || ||| |||| ||| || |
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| T |
38246346 |
gagaaccaggtactttttgcaagcataaaattaccctcttcgcctctaagac--attccaagtcctaccttattaagcgacgaggagaacgaggcatcta |
38246443 |
T |
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| Q |
117 |
tattgcatttataccttctaggagtcggttttatccattagtacaaagctgtaaaagtcgatccatgtggatca |
190 |
Q |
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| T |
38246444 |
tttttcatttataccttctaggggccggttttacccattgttaccaagctataagagtcggcccatgtggatca |
38246517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 273
Target Start/End: Complemental strand, 24497767 - 24497732
Alignment:
| Q |
238 |
attttaatattaatgacatgaaaatgagatgtctaa |
273 |
Q |
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| T |
24497767 |
attttaatattaatgacatgtaaatgagatgtctaa |
24497732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 128
Target Start/End: Complemental strand, 12224312 - 12224243
Alignment:
| Q |
59 |
tctctaagacgcatccaaagtcctaccttattaagcgacaagaagatcgagacatatatattgcatttat |
128 |
Q |
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|||||||||| ||| | |||||||||||| || | | || || ||| ||||||||||||||||||||||| |
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| T |
12224312 |
tctctaagacacattctaagtcctaccttgttgaacaacgaggagaacgagacatatatattgcatttat |
12224243 |
T |
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