View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12419_high_9 (Length: 562)
Name: NF12419_high_9
Description: NF12419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12419_high_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 17 - 428
Target Start/End: Complemental strand, 30691371 - 30690960
Alignment:
| Q |
17 |
gtgctcgagtttctaatgatgaaatcttaggctttgccaaattatttaatgacgagttcactttggataacattagcaggttgatccttctaccattggt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
30691371 |
gtgctcgagtttctaatgatgaaatcttaggctttgccaaattatttaatgacgagttcactttggataacattagcaggttggtccttctaccattggt |
30691272 |
T |
|
| Q |
117 |
tatgttcaactaattgtgcttttctgttatgaatatcatattctggatttccatgatcgttatgctaacatgtcttttggtttcgaaaatggataaacag |
216 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30691271 |
tatgttcaactaattgtgcttttctgttacgaatatcatattctggatttccatgatcgttatgctaacatgtcttttggtttcgaaaatggataaacag |
30691172 |
T |
|
| Q |
217 |
gcctcgcttggtaaatatgtgtaaatacatgggtatcagcccatatggtactgatacatatttgcgttatatgctccgcaaaagattacaggagtaagat |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30691171 |
gcctcgcttggtaaatatgtgtaaatacatgggtatcagcccatatggtactgatacatatttgcgttatatgctccgcaaaagattacaggagtaagat |
30691072 |
T |
|
| Q |
317 |
tcatgattccttttttcctttctgtgataactctgattatggtgtatgtatatcattccttgtctcttataggttagagttaggaaagtttcatttaatg |
416 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
30691071 |
tcaagattccttttttcctttctgtgataactctgattatggtgtatgtatatcattccttgtctcttatatgttagagttaggaaagtttcatttaatg |
30690972 |
T |
|
| Q |
417 |
ttttatgttgta |
428 |
Q |
| |
|
|||||||||||| |
|
|
| T |
30690971 |
ttttatgttgta |
30690960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 461 - 546
Target Start/End: Complemental strand, 30690933 - 30690847
Alignment:
| Q |
461 |
ctgttttatgtcgtattttttcgttttgtctggtttagataagga-nnnnnnnnnccaattattgtacatatcttatgcacgttatg |
546 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30690933 |
ctgttttatgttgtattttttcgttttgtctggtttagataaggattttttttttccaattattgtacatatcttatgcacgttatg |
30690847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University