View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12419_low_11 (Length: 457)
Name: NF12419_low_11
Description: NF12419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12419_low_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 76 - 440
Target Start/End: Complemental strand, 18982551 - 18982189
Alignment:
| Q |
76 |
cctttaaattttgtgactttttaggttgaggaattatctcttattcatgatcaagattcagggatagttggacttttattattctcagaatttaagtatt |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18982551 |
cctttaaattttgtgactttttaggttgaggaattatctcttattcatgatcaagattcagggatagttggacttttattattctcagaatttaagtatt |
18982452 |
T |
|
| Q |
176 |
tcttcaagaatattatcataaagtgaaatattgcatttgtgattgaacaaaattaaggtttttcttcaaccgtggagtacatgtggttccattaagatca |
275 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
18982451 |
tcttcaagtatattatcataaagtgaaatattgcatttgtgattgaacaaaattaaggtttttcttcaaccgtggagtaca--tgattccattaagatca |
18982354 |
T |
|
| Q |
276 |
ttggatcatctaccaaatgattcttgaagaaattatatgcttgtggaatcaagagaattgaggctcttgatgaaagtatatgcttggttcaactaagtag |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18982353 |
ttggatcatctaccaaatgattcttgaagaaatcatatgcttgtggaatcaagagaattgaggctcttgatgaaagtatatgcttggttcaactaagtag |
18982254 |
T |
|
| Q |
376 |
ctacgtgtctctctggattatataattcgaacatacaaaaaatatcatttagccatgtcaggatt |
440 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18982253 |
ctacgtgactctctggattatataattcgaacatacaaaaaatatcatttagccatgtcaggatt |
18982189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 18982575 - 18982610
Alignment:
| Q |
1 |
cccttcatcattctcctccactcaagaaataggtga |
36 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
18982575 |
cccttcatcattctcctccactcaagaaataggtga |
18982610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University