View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12419_low_14 (Length: 447)
Name: NF12419_low_14
Description: NF12419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12419_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 20 - 428
Target Start/End: Complemental strand, 55708439 - 55708031
Alignment:
| Q |
20 |
gatttgccattacaaatatcactacctgcaacttttgcttgtggtttgcagcttgaagaaaacccctgcagaagaaagggttactcgctatgggtaaaaa |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
55708439 |
gatttgccattacaaatatcactacctgcaacttttgcttgtggtttgcagcttgaagaaaacccctgcagaagaaagggttacgcgctatgggtaaaaa |
55708340 |
T |
|
| Q |
120 |
gtgtttgaatttatccactgatagcaaactacccgttatgtaattattttgctcattatttattgcnnnnnnnaaactggaatttattgttgttaagaac |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||| || |
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| T |
55708339 |
gtgtttgaatttatccactgatagcaaactacccgttatgtaattattttgctcattatttattgctttttttaaactggaatatattgtttttaaggac |
55708240 |
T |
|
| Q |
220 |
ataattatgtttctgccaccaacgtttgtggaagcagaacacaaagtagttgaagatcattcctgtcaatagcggcctgcaatattagtaggagttgcag |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
55708239 |
ataattatgtttctgccaccaacgtttgtggaagcagaacacaaagtagttgaagatcattcctctcaatagcggcctgcaatattagtaggagttgcag |
55708140 |
T |
|
| Q |
320 |
gtggcattccagcaaaaccataagatataactggtatgtttatcagagaaaagcatttcttgtccacatatattttgctgaacgcctaaacaagaactgg |
419 |
Q |
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| T |
55708139 |
gtggcattccagcaaaaccataagatataactggtatgtttatcagagaaaagcatttcttgtcagcatatattttgctgaatgcctaaacaagaactgg |
55708040 |
T |
|
| Q |
420 |
taacacagc |
428 |
Q |
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||||||||| |
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| T |
55708039 |
taacacagc |
55708031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 215 - 382
Target Start/End: Complemental strand, 56046937 - 56046769
Alignment:
| Q |
215 |
agaacataattatgtttctgccaccaacgtttgtggaagcagaacacaaagtagttgaagatcattcctgtcaatagcg-gcctgcaatattagtaggag |
313 |
Q |
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||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| || |||||| ||||| |||| |
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| T |
56046937 |
agaacataattatatttctgccaccaacgtttgtggaagcggaacacaaagtagttgaagatcattccggtcaatagccagcttgcaatgttagttggag |
56046838 |
T |
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| Q |
314 |
ttgcaggtggcattccagcaaaaccataagatataactggtatgtttatcagagaaaagcatttcttgt |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
56046837 |
ttgcaggtggcattccagcaaaaccataagatataactggtatgtttatcagaggaatccatttcttgt |
56046769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 216 - 361
Target Start/End: Complemental strand, 47295145 - 47294994
Alignment:
| Q |
216 |
gaacataattatgtttctgccaccaacgtttgtggaagcagaacacaaagtagttgaagatcattcctgtcaatag--cggcctgcaatatta----gta |
309 |
Q |
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||||||| |||| |||||||||||||||||| ||||||| |||||||||| ||||||||||||||||| ||||||| |||||| | ||| ||| |
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| T |
47295145 |
gaacatagttatatttctgccaccaacgtttttggaagcggaacacaaagcagttgaagatcattcctatcaataggataccctgcattgttagtatgta |
47295046 |
T |
|
| Q |
310 |
ggagttgcaggtggcattccagcaaaaccataagatataactggtatgttta |
361 |
Q |
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||||||||| |||||||||||||||||| |||||||||||||||||||||| |
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| T |
47295045 |
ggagttgcacgtggcattccagcaaaactgtaagatataactggtatgttta |
47294994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 49444159 - 49443986
Alignment:
| Q |
20 |
gatttgccattacaaatatcactacctgcaacttttgcttgtggtttgcagcttgaagaaaacccctgcagaagaaaggg-------ttactcgctatgg |
112 |
Q |
| |
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|||| ||||||||| || ||||| || |||||||||||||||| |||||||||||||||||| |||| | ||| |||||| ||||||| ||||| |
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| T |
49444159 |
gattggccattacagatctcactgcccgcaacttttgcttgtgatttgcagcttgaagaaaaaccctacggaaaaaagggggtgaaattactcgttatgg |
49444060 |
T |
|
| Q |
113 |
gtaaaaa-gtgtttgaatttatccactgatagcaaactacccgttatgtaattattttgctcattatttattgc |
185 |
Q |
| |
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||||||| | |||||||||||| |||| |||||||||||| | |||| ||||| ||||| |||||||||||||| |
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| T |
49444059 |
gtaaaaaagagtttgaatttattcactaatagcaaactactcattatttaattcttttgatcattatttattgc |
49443986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 217 - 353
Target Start/End: Original strand, 35802360 - 35802497
Alignment:
| Q |
217 |
aacataattatgtttctgccaccaacgtttgtggaagcagaacacaaagtagttgaagatcattcctgtcaatagcggcct-gcaatattagtaggagtt |
315 |
Q |
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|||||||||||||| ||| | | ||||||||||||||| |||||||||||||||||||||||||| || || || ||| |||| |||||||||||| |
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| T |
35802360 |
aacataattatgttcctgtcgctaacgtttgtggaagcggaacacaaagtagttgaagatcattctggtgaaaggccaccttgcaaagttagtaggagtt |
35802459 |
T |
|
| Q |
316 |
gcaggtggcattccagcaaaaccataagatataactgg |
353 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
35802460 |
gcaggtggcattccagcaaaaccataagatataactgg |
35802497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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