View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12419_low_15 (Length: 445)
Name: NF12419_low_15
Description: NF12419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12419_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 11 - 429
Target Start/End: Original strand, 46984327 - 46984751
Alignment:
| Q |
11 |
cagagaaacgtgaactaatgcttcatcaagtggagcagagaagttaccaaaccggttaatacccttcctatcaccaagagcctgcagcaaagcctggaga |
110 |
Q |
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| T |
46984327 |
cagagaaacgtgaactaatgcttcatcaagcggagcagagaagttaccaaaccggttaatacccttcctatcaccaagagcctgcagcaaagcctggaga |
46984426 |
T |
|
| Q |
111 |
caaagtaacagaaatctatgctttactatgatgatagatagaggctaacacactaaaaaacaaagctctaagttaattgaaaattcccaccgtgataaga |
210 |
Q |
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| T |
46984427 |
cgaagtaacagaaatctatgctttactatgatgatagatagaggctaacacactaaaaaacaaagctctaagttaattgaaaattcccaccgtgataaga |
46984526 |
T |
|
| Q |
211 |
ttataatcaatgttagagtcgttatggtcaattagttaaattgcattttgcatagaaaggatgaagtccaatgcaaagatttaacttcacaccaatcttt |
310 |
Q |
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| T |
46984527 |
ttataatcaatgttagagtcgttatggtcaattagttaaattgcattttgcatagaaaggatgaagtccaatgcaaagatttaacttcacaccaatcttt |
46984626 |
T |
|
| Q |
311 |
aaacat------cattccaggaacagctgtaataagtagagccaaaaagaaaagaaataaacagctcacttagctgttggcagtaccgttccaatagcaa |
404 |
Q |
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| T |
46984627 |
aaacatgtttaacattccaggaacagctgtaataagtagagccaaaaagaaaagaaataaacagctcacttagctgttggcagtaccgttccaatagcaa |
46984726 |
T |
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| Q |
405 |
gagcgacatcttcatttgtgtgatg |
429 |
Q |
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| T |
46984727 |
gagcgacatcttcatttgtgtgatg |
46984751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 15 - 125
Target Start/End: Original strand, 31684980 - 31685090
Alignment:
| Q |
15 |
gaaacgtgaactaatgcttcatcaagtggagcagagaagttaccaaaccggttaatacccttcctatcaccaagagcctgcagcaaagcctggagacaaa |
114 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
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| T |
31684980 |
gaaacgtgaactaatgcttcatcaagcggagcagagaagttaccaaaccggttaataccattcctatcaccaagagcctgcagcaaagcctggagatgaa |
31685079 |
T |
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| Q |
115 |
gtaacagaaat |
125 |
Q |
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|||| |||||| |
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| T |
31685080 |
gtaatagaaat |
31685090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 106
Target Start/End: Original strand, 17899739 - 17899818
Alignment:
| Q |
27 |
aatgcttcatcaagtggagcagagaagttaccaaaccggttaatacccttcctatcaccaagagcctgcagcaaagcctg |
106 |
Q |
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|||||||||||||| ||||||||||||| || ||| ||||||| || || ||||| ||||| || |||| ||||||||| |
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| T |
17899739 |
aatgcttcatcaagaggagcagagaagtctccgaacgggttaattccttttctatctccaagggcttgcaacaaagcctg |
17899818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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