View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12419_low_19 (Length: 399)
Name: NF12419_low_19
Description: NF12419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12419_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 14 - 382
Target Start/End: Complemental strand, 445531 - 445163
Alignment:
| Q |
14 |
tgtgacgaccaactattcgagcaataaatttcagcatcatcatcttaacctaaaatttacacatggtaattgcataaaccagtgaatatgtaatcttgaa |
113 |
Q |
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| T |
445531 |
tgtgacgaccaactattcgagcaataaatttcagcatcatcatcttaacctaaaatttacacatggtaattgcataaaccagtgaatatgtaatcttgaa |
445432 |
T |
|
| Q |
114 |
tacccatgagccgatatgaaaaggaattgcacgtannnnnnnataacattacatagaaatgcttatttgataatgagtaatgcacctcagattcttcatt |
213 |
Q |
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| T |
445431 |
tacccatgagccgatatgaaaaggaattgcacgtatttttttataacattgcatagaaatgcttatttgataatgagtaatgcacctcagattcttcatt |
445332 |
T |
|
| Q |
214 |
atatgtctgaaggcaggagaacagcttctcagcaaatccctgcagaccatatggtattgaatgttgttgatccaagagcaaaatccaagtccaaaatgaa |
313 |
Q |
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| T |
445331 |
atatgtctgaaggcaggagaacagcttctcagcaaaaccctgcagaccatatggtattgaatgttgttgatccaagagcaaaatccaagtccaaaatgaa |
445232 |
T |
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| Q |
314 |
actacaatggtgatcacaaacctgtctatctatcatatggtttagtggtgaatagtaatcgttgttgat |
382 |
Q |
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| T |
445231 |
actacaatggtgatcacaaacctgtctatctatcatatggtttagtggtgaatagtaatcgttgttgat |
445163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 30 - 366
Target Start/End: Original strand, 464839 - 465177
Alignment:
| Q |
30 |
tcgagcaataaatttcagcatcatcatcttaacctaaaatttacacatggtaattgcataaaccagtgaatatgtaatcttgaatacccatgagccgata |
129 |
Q |
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| T |
464839 |
tcgagcaatcaatttcaacatcatcatcttaacctaaaatatacacatggtaattgcataaactagtaaatatgtaatattgaataaccatgagcagata |
464938 |
T |
|
| Q |
130 |
tgaaaaggaattgcacgtannnnnnnataacattacatagaaatgcttatttgataatgagtaatg---cacctcagattcttcattatatgtctgaagg |
226 |
Q |
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| T |
464939 |
tgaaaag-aattgcaagtcttcttttataacattatacagaaatgcttatttgatattgagtaataattcacctcagatccttctttaaagtgctgaaga |
465037 |
T |
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| Q |
227 |
caggagaacagcttctcagcaaatccctgcagaccatatggtattgaatgttgttgatccaagagcaaaatccaagtccaaaatgaaactacaatggtga |
326 |
Q |
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| T |
465038 |
cgagagaacagcctctctgcaaaactctgcagaccatatgggattgaatgttgatgatccaaaaccaaaatccaaaaccaaaatgaaactacggtaacga |
465137 |
T |
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| Q |
327 |
tcacaaacctgtctatctatcatatggtttagtggtgaat |
366 |
Q |
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| T |
465138 |
tcacaaacctgtttatctgtcagatggtttagtggtgaat |
465177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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