View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12419_low_20 (Length: 393)
Name: NF12419_low_20
Description: NF12419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12419_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 147 - 382
Target Start/End: Complemental strand, 42817021 - 42816787
Alignment:
| Q |
147 |
ctctaagagcaagagctacacatgagtttgctttcagatgaatgtaattaacctgaatagtccaacctaagaggtggataaaataaagaacctcctgacg |
246 |
Q |
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| T |
42817021 |
ctctaagagcaagagctacacatgagtttgcttttagatgaatgtaattaacctgaatagtccaacctaaaaggtggataaaataaagaacctcctgacg |
42816922 |
T |
|
| Q |
247 |
tagttattgaagatgaaggatagcagtaaaccgattgtgaatcatattaataacacgagttgagtccgattataggatgacatgagttagatgcataatt |
346 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42816921 |
tagacattgaagatgaaggatagcagtaaaccgattgtgaatcatattaacaacactagttgagtctgattataggatgacatgagttagatgcataatt |
42816822 |
T |
|
| Q |
347 |
cagcaagtaagacatctcatgttcctaagatacacc |
382 |
Q |
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| T |
42816821 |
cagcaagtaagacatctcatgttcc-aagatacacc |
42816787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 147 - 311
Target Start/End: Complemental strand, 42806632 - 42806468
Alignment:
| Q |
147 |
ctctaagagcaagagctacacatgagtttgctttcagatgaatgtaattaacctgaatagtccaacctaagaggtggataaaataaagaacctcctgacg |
246 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
42806632 |
ctctaagagcaagagctacacacgagtttgctttcagatgaatgtgattaacctgaataatccaacctaagaggtggataaaataaagaacctcctgaca |
42806533 |
T |
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| Q |
247 |
tagttattgaagatgaaggatagcagtaaaccgattgtgaatcatattaataacacgagttgagt |
311 |
Q |
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| T |
42806532 |
tagacattgaagatgaaggatagcagtaaaccgattgtgaatcatattaacaacacgagttgagt |
42806468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 382
Target Start/End: Complemental strand, 42805605 - 42805555
Alignment:
| Q |
328 |
atgagttagatgcataattcagcaagtaagacatctcatgttcctaagatacacc |
382 |
Q |
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| T |
42805605 |
atgagttagatgcataattca---agtaagacatctcatgttcc-aagatacacc |
42805555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 11 - 150
Target Start/End: Original strand, 43496607 - 43496746
Alignment:
| Q |
11 |
aaatccaccaaagcacaaaccacggtagcaatgcaatgctacggttgccattgaaagacacacccaaaatataaaatattgtgcttattctgacacatgg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43496607 |
aaatccaccaaagcacaaaccacggtagcaatgcaatgctacggttgccattgaaagacacacccaaaatataaaatattgtgcttattctgacacatgg |
43496706 |
T |
|
| Q |
111 |
tgtctttggcacagttatgcaaccccgataatcatgctct |
150 |
Q |
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| T |
43496707 |
tgtctttggcacagttatgcaaccccgataatcatgctct |
43496746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 136; Significance: 8e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 11 - 150
Target Start/End: Complemental strand, 18226888 - 18226749
Alignment:
| Q |
11 |
aaatccaccaaagcacaaaccacggtagcaatgcaatgctacggttgccattgaaagacacacccaaaatataaaatattgtgcttattctgacacatgg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18226888 |
aaatccaccaaagcacaaaccacggtagcaatgcaatgctacggttgccattgaaagacacacccaaaatataaaatattgtgcttattctgacacatgg |
18226789 |
T |
|
| Q |
111 |
tgtctttggcacagttatgcaaccccgataatcatgctct |
150 |
Q |
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||||||||||| |||||||||||||||||||||||||||| |
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| T |
18226788 |
tgtctttggcatagttatgcaaccccgataatcatgctct |
18226749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 11 - 152
Target Start/End: Complemental strand, 34769457 - 34769316
Alignment:
| Q |
11 |
aaatccaccaaagcacaaaccacggtagcaatgcaatgctacggttgccattgaaagacacacccaaaatataaaatattgtgcttattctgacacatgg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34769457 |
aaatccaccaaagcacaaaccacggtagcaatacaatgctacggttgccattgaaagacacacccaaaatataaaatattgtgcttattctgacatatgg |
34769358 |
T |
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| Q |
111 |
tgtctttggcacagttatgcaaccccgataatcatgctctaa |
152 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
34769357 |
tgtctttggcacagttatgcaaccccgataatcatgctctaa |
34769316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 128; Significance: 5e-66; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 11 - 150
Target Start/End: Complemental strand, 7352008 - 7351869
Alignment:
| Q |
11 |
aaatccaccaaagcacaaaccacggtagcaatgcaatgctacggttgccattgaaagacacacccaaaatataaaatattgtgcttattctgacacatgg |
110 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
7352008 |
aaatccaccaaagcacaaaccacggtagcaatgcaatgctacggttgccattgaaagatacacccaaaatataaaatattgtgcttattctgacacatgg |
7351909 |
T |
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| Q |
111 |
tgtctttggcacagttatgcaaccccgataatcatgctct |
150 |
Q |
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||||||||||| ||||||||||||||| |||||||||||| |
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| T |
7351908 |
tgtctttggcatagttatgcaaccccggtaatcatgctct |
7351869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 48370634 - 48370571
Alignment:
| Q |
164 |
acacatgagtttgctttcagatgaatgtaattaacctgaatagtccaacctaagaggtggataa |
227 |
Q |
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| T |
48370634 |
acacatgagtttgctttccgatgaatgtgattaacctgaatagtctaacctaggaggtggataa |
48370571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 59 - 127
Target Start/End: Original strand, 23368428 - 23368496
Alignment:
| Q |
59 |
cattgaaagacacacccaaaatataaaatattgtgcttattctgacacatggtgtctttggcacagtta |
127 |
Q |
| |
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||||||| ||||| ||||||||| ||||| |||||| |||| ||||||||||||||||||||||||| |
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| T |
23368428 |
cattgaaggacacttccaaaatatgaaataccgtgcttgttctcacacatggtgtctttggcacagtta |
23368496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 338
Target Start/End: Complemental strand, 48370534 - 48370462
Alignment:
| Q |
266 |
atagcagtaaaccgattgtgaatcatattaataacacgagttgagtccgattataggatgacatgagttagat |
338 |
Q |
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|||| ||||||||||||||| |||||||||| |||| ||||||| || || || |||||||||||| |||| |
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| T |
48370534 |
atagaagtaaaccgattgtggatcatattaacaacatgagttgaatcaatttttacgatgacatgagtaagat |
48370462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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