View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12419_low_22 (Length: 385)

Name: NF12419_low_22
Description: NF12419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12419_low_22
NF12419_low_22
[»] chr8 (3 HSPs)
chr8 (7-134)||(28384250-28384377)
chr8 (134-257)||(28384077-28384199)
chr8 (298-348)||(28383964-28384014)
[»] chr7 (5 HSPs)
chr7 (32-134)||(27528992-27529094)
chr7 (32-135)||(36988751-36988854)
chr7 (32-130)||(6924082-6924180)
chr7 (137-233)||(6924238-6924334)
chr7 (134-190)||(27529145-27529201)
[»] chr3 (4 HSPs)
chr3 (32-134)||(30831506-30831608)
chr3 (32-126)||(53116066-53116160)
chr3 (137-233)||(30831662-30831758)
chr3 (151-233)||(47460415-47460497)
[»] chr4 (2 HSPs)
chr4 (32-130)||(499334-499432)
chr4 (137-233)||(499490-499586)
[»] chr6 (1 HSPs)
chr6 (31-127)||(17260232-17260328)
[»] chr1 (1 HSPs)
chr1 (32-134)||(47448265-47448367)


Alignment Details
Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 7 - 134
Target Start/End: Complemental strand, 28384377 - 28384250
Alignment:
Q  7 gaacctgtgccattgatttcccattaaccaaaccatttttaatagaaagaaatgtagtggaataagtgaattcaataaacaaattcctcgatggtcatac 106  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||  ||| ||| ||||||| || ||| ||||||||||    
T  28384377 gaacctgtgccattgatttctcattaaccaaaccatttttaatacaaagaaatgtagtggaataatcgaaatcagtaaacaagtttctcaatggtcatac 28384278  T
Q  107 aacttagtagacgaattggagcaagtga 134  Q
    |||||| |||| ||| ||||||||||||    
T  28384277 aacttaatagatgaaatggagcaagtga 28384250  T

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Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 134 - 257
Target Start/End: Complemental strand, 28384199 - 28384077
Alignment:
Q  134 atagtaatttttaatgagaatacagatacactgattttgaatcttgatcctagaaatgacaatgacattatttctgaactggacctaaatcatgaatttt 233  Q
    |||||||||||||||  |||||||||| |||| | ||||||||||| |||||||| ||||||||||  |||| ||||||||||||||||||| |||||||    
T  28384199 atagtaatttttaataggaatacagattcactaactttgaatcttggtcctagaa-tgacaatgacgctattcctgaactggacctaaatcacgaatttt 28384101  T
Q  234 gtgaatgttttttaagctttttcc 257  Q
    |||| || ||||||||||||||||    
T  28384100 gtgagtggtttttaagctttttcc 28384077  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 298 - 348
Target Start/End: Complemental strand, 28384014 - 28383964
Alignment:
Q  298 cagatacagtacgtaaaacatttttacgtttacatcaaccatgtatataac 348  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  28384014 cagatacagtacgtaaaacatttttacgtttacaacaaccatgtatataac 28383964  T

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Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 32 - 134
Target Start/End: Original strand, 27528992 - 27529094
Alignment:
Q  32 aaccaaaccatttttaatagaaagaaatgtagtggaataagtgaattcaataaacaaattcctcgatggtcatacaacttagtagacgaattggagcaag 131  Q
    ||||||||||||||| ||||||||||||||||||||||||  ||| ||| ||||||| ||||||||||||||||| | ||| | ||||||||||||||||    
T  27528992 aaccaaaccattttttatagaaagaaatgtagtggaataaacgaaatcagtaaacaagttcctcgatggtcatacgagttaatcgacgaattggagcaag 27529091  T
Q  132 tga 134  Q
    |||    
T  27529092 tga 27529094  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 32 - 135
Target Start/End: Complemental strand, 36988854 - 36988751
Alignment:
Q  32 aaccaaaccatttttaatagaaagaaatgtagtggaataagtgaattcaataaacaaattcctcgatggtcatacaacttagtagacgaattggagcaag 131  Q
    ||||||||||||||||||||||||||||||||  ||||||   || ||| ||||||| |||||| |||||||||||||||| | ||||||||||||||||    
T  36988854 aaccaaaccatttttaatagaaagaaatgtagctgaataaactaaatcagtaaacaagttcctcaatggtcatacaacttaatcgacgaattggagcaag 36988755  T
Q  132 tgat 135  Q
    ||||    
T  36988754 tgat 36988751  T

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Target: chr7; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 32 - 130
Target Start/End: Original strand, 6924082 - 6924180
Alignment:
Q  32 aaccaaaccatttttaatagaaagaaatgtagtggaataagtgaattcaataaacaaattcctcgatggtcatacaacttagtagacgaattggagcaa 130  Q
    ||||||||||||||||||||||||||||||| ||||||||  ||| ||| ||||||| ||||||||||||||||| | ||| | |||||||||||||||    
T  6924082 aaccaaaccatttttaatagaaagaaatgtactggaataaacgaaatcagtaaacaagttcctcgatggtcatacgagttaatcgacgaattggagcaa 6924180  T

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Target: chr7; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 137 - 233
Target Start/End: Original strand, 6924238 - 6924334
Alignment:
Q  137 gtaatttttaatgagaatacagatacactgattttgaatcttgatcctagaaatgacaatgacattatttctgaactggacctaaatcatgaatttt 233  Q
    ||||||||||||| |||||||||| |||||| ||||||| ||| |||||||||||||||||||  ||||  |||| ||||| ||||||| |||||||    
T  6924238 gtaatttttaatgggaatacagattcactgactttgaatattggtcctagaaatgacaatgacgctattcttgaagtggacttaaatcacgaatttt 6924334  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 190
Target Start/End: Original strand, 27529145 - 27529201
Alignment:
Q  134 atagtaatttttaatgagaatacagatacactgattttgaatcttgatcctagaaat 190  Q
    |||||||||||||||| |||||||  | |||| | ||||||||||||||||| ||||    
T  27529145 atagtaatttttaatgggaatacaagttcactaaatttgaatcttgatcctaaaaat 27529201  T

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Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 32 - 134
Target Start/End: Original strand, 30831506 - 30831608
Alignment:
Q  32 aaccaaaccatttttaatagaaagaaatgtagtggaataagtgaattcaataaacaaattcctcgatggtcatacaacttagtagacgaattggagcaag 131  Q
    ||||||||||||||||||||||||||||||||||||||||  ||| ||| ||||||| ||||||||||||||||| | ||| | |||||||| |||||||    
T  30831506 aaccaaaccatttttaatagaaagaaatgtagtggaataaacgaaatcagtaaacaagttcctcgatggtcatacgagttaatcgacgaattagagcaag 30831605  T
Q  132 tga 134  Q
    |||    
T  30831606 tga 30831608  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 32 - 126
Target Start/End: Original strand, 53116066 - 53116160
Alignment:
Q  32 aaccaaaccatttttaatagaaagaaatgtagtggaataagtgaattcaataaacaaattcctcgatggtcatacaacttagtagacgaattgga 126  Q
    ||||||||||||||||||| ||||||||||||||||||||   || ||| ||| ||| || |||||||||||||||||||| | |||||||||||    
T  53116066 aaccaaaccatttttaataaaaagaaatgtagtggaataaacaaaatcagtaaccaagtttctcgatggtcatacaacttaatcgacgaattgga 53116160  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 137 - 233
Target Start/End: Original strand, 30831662 - 30831758
Alignment:
Q  137 gtaatttttaatgagaatacagatacactgattttgaatcttgatcctagaaatgacaatgacattatttctgaactggacctaaatcatgaatttt 233  Q
    ||||| ||||||  |||||||||| |||||| ||||||||||| ||||||||||||||||||   |||| ||||||||||||| ||||| |||||||    
T  30831662 gtaatatttaataggaatacagattcactgactttgaatcttggtcctagaaatgacaatgatgctattcctgaactggacctgaatcacgaatttt 30831758  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 151 - 233
Target Start/End: Complemental strand, 47460497 - 47460415
Alignment:
Q  151 gaatacagatacactgattttgaatcttgatcctagaaatgacaatgacattatttctgaactggacctaaatcatgaatttt 233  Q
    |||||||||  |||||| ||||||| ||| |||||||||||||||||||  |||| ||||| ||||||||||||| |||||||    
T  47460497 gaatacagagtcactgactttgaatattggtcctagaaatgacaatgacgctattcctgaagtggacctaaatcacgaatttt 47460415  T

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Target: chr4 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 32 - 130
Target Start/End: Original strand, 499334 - 499432
Alignment:
Q  32 aaccaaaccatttttaatagaaagaaatgtagtggaataagtgaattcaataaacaaattcctcgatggtcatacaacttagtagacgaattggagcaa 130  Q
    ||||||||||||||||||||||||||||||| ||||||||  ||| ||| ||||||| ||||||||||||||||| | ||| | |||||||||||||||    
T  499334 aaccaaaccatttttaatagaaagaaatgtactggaataaacgaaatcagtaaacaagttcctcgatggtcatacgagttaatcgacgaattggagcaa 499432  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 137 - 233
Target Start/End: Original strand, 499490 - 499586
Alignment:
Q  137 gtaatttttaatgagaatacagatacactgattttgaatcttgatcctagaaatgacaatgacattatttctgaactggacctaaatcatgaatttt 233  Q
    ||||||||||||| |||||||||| |||||| ||||||| ||| |||||||||||||||||||  |||| ||||| ||||||||||||| |||||||    
T  499490 gtaatttttaatgggaatacagattcactgactttgaatattggtcctagaaatgacaatgacgctattcctgaagtggacctaaatcacgaatttt 499586  T

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Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 31 - 127
Target Start/End: Original strand, 17260232 - 17260328
Alignment:
Q  31 taaccaaaccatttttaatagaaagaaatgtagtggaataagtgaattcaataaacaaattcctcgatggtcatacaacttagtagacgaattggag 127  Q
    |||||||||||||||||||||||||||||||||||||||||  ||| | | ||||||| ||||||||||||||||| | ||| | ||||||||||||    
T  17260232 taaccaaaccatttttaatagaaagaaatgtagtggaataaacgaaattagtaaacaagttcctcgatggtcatacgagttaatcgacgaattggag 17260328  T

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Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 32 - 134
Target Start/End: Complemental strand, 47448367 - 47448265
Alignment:
Q  32 aaccaaaccatttttaatagaaagaaatgtagtggaataagtgaattcaataaacaaattcctcgatggtcatacaacttagtagacgaattggagcaag 131  Q
    ||||||||||||||||||||||||||||||||||||||||   || ||| ||||||| ||||| ||||||||||| | ||| | ||| ||||||||||||    
T  47448367 aaccaaaccatttttaatagaaagaaatgtagtggaataaacaaaatcagtaaacaagttccttgatggtcatacgagttaatcgacaaattggagcaag 47448268  T
Q  132 tga 134  Q
    |||    
T  47448267 tga 47448265  T

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