View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12419_low_23 (Length: 371)
Name: NF12419_low_23
Description: NF12419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12419_low_23 |
 | |
|
| [»] scaffold0425 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 17)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 19 - 347
Target Start/End: Complemental strand, 6238530 - 6238199
Alignment:
| Q |
19 |
gtataagaattagagcaagtattggatgtcattgctactgatgctgcacaacaaaagggaaagatacaacgctttctttcaggttctatcaatcgatttg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6238530 |
gtataagaattagagcaagtattggatgtcattgctactgatgctgcacaacaaaagggaaagatacaacgctatctttcaggttctatcaatcgatttg |
6238431 |
T |
|
| Q |
119 |
aatctaggattaaagtattgctcgagaggctagagtttcttgcaaatcaaaaggatagattgcaacttcatagttcttattattatgaagatggagccag |
218 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6238430 |
aatctaggattaaagtattgctcaagaggttagagtttcttgcaaatcaaaaggatagattgcaacttcatagttcttattattatgaagatggagccag |
6238331 |
T |
|
| Q |
219 |
cgattttgctact---tcattcatggctgaatctatcgtatatggtagagagcgtgaaaaggaggaaatagtcgaatttttactttcagacagttataat |
315 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6238330 |
cgattttgctacttcatcattcatggctgaatctatcgtatatggtagagagcgtgaaaaagaggaaatagtcgaatttttactttcagacagttataat |
6238231 |
T |
|
| Q |
316 |
ttgttcttaaaattattaaaatatttgcggat |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
6238230 |
ttgttcttaaaattattaaaatatttgcggat |
6238199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 19 - 311
Target Start/End: Complemental strand, 6260025 - 6259727
Alignment:
| Q |
19 |
gtataagaattagagcaagtattggatgtcattgctactgatgctgcacaacaaaagggaaagatacaacgctttctttcaggttctatcaatcgatttg |
118 |
Q |
| |
|
||||| ||||| || ||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6260025 |
gtatacgaattggaacaactattggatgtcattgctactgacgccgcacaacaaaagggaaagatacaacgctttctttcaggttctatcaatcgatttg |
6259926 |
T |
|
| Q |
119 |
aatctaggattaaagtattgctcgagaggctagagtttcttgcaaatcaaaaggatagattgcaacttc-atagtt--cttattat---tatgaagatgg |
212 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||| |||||| | |||| || ||||| |||||||| | |
|
|
| T |
6259925 |
aatctaggattaaagtattgcttaagaggctagagtttcttgcaatggaaaaatctagattggaacttcaagagtttactaattatttatatgaagaaag |
6259826 |
T |
|
| Q |
213 |
agccagcgattttgctacttcattcatggctgaatctatcgtatatggtagagagcgtgaaaaggaggaaatagtcgaatttttactttcagacagtta |
311 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||| || |||||||||||||||||||||| |
|
|
| T |
6259825 |
agccagcggtttcgctacttcattcatggctgaatctatcatatatggtagagaacgtgaaaaagaggaaataatcaaatttttactttcagacagtta |
6259727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 20 - 309
Target Start/End: Complemental strand, 6169761 - 6169466
Alignment:
| Q |
20 |
tataagaattagagcaagtattggatgtcattgctactgatgctgcacaacaaaagggaaagatacaacgctttctttcaggttctatcaatcgatttga |
119 |
Q |
| |
|
|||| ||| |||||||| | |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6169761 |
tatacgaagtagagcaactgttggatgtcattgctactgacgccgcacaacaaaagggaaagatacaacgctttctttcaggttctatcaatcgatttga |
6169662 |
T |
|
| Q |
120 |
atctaggattaaagtattgctcgagaggctagagtttcttgcaaatcaaaaggatagattgcaacttcat-ag--ttcttattattatgaagatggagcc |
216 |
Q |
| |
|
||||||||||||||||||| || |||||||| || |||||||||| ||||| |||||||||||||||||| || || || |||| |||||||||||||| |
|
|
| T |
6169661 |
atctaggattaaagtattgatcaagaggctaaaggttcttgcaaaacaaaatgatagattgcaacttcatcaggattattgttatcatgaagatggagcc |
6169562 |
T |
|
| Q |
217 |
agcgattttg---ctacttcattcatggctgaatctatcgtatatggtagagagcgtgaaaaggaggaaatagtcgaatttttactttcagacagt |
309 |
Q |
| |
|
||| |||||| || | ||||||||| |||||||||| ||||||||||||||| ||| || || |||||| | || |||||||||||| ||||| |
|
|
| T |
6169561 |
agcaattttggaacttcatcattcatgaatgaatctatcatatatggtagagagcatgagaaagaagaaataattgattttttactttcatacagt |
6169466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 19 - 309
Target Start/End: Complemental strand, 6246161 - 6245862
Alignment:
| Q |
19 |
gtataagaattagagcaagtattggatgtcattgctactgatgctgcacaacaaaagggaaagatacaacgctttctttcaggttctatcaatcgatttg |
118 |
Q |
| |
|
||||| |||||||| ||| ||||||| ||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6246161 |
gtatacgaattagatcaactattggacatcattgctagtgacgctgcaaaacaaaagggaaagatacaacgctttctttcaggttctatcaatcgatttg |
6246062 |
T |
|
| Q |
119 |
aatctaggattaaagtattgctcgagaggctagagtttcttgcaaatcaaaaggatagattgcaacttca------tagttcttattattatgaagatgg |
212 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||| |||| |||||| ||| |||||||||||||||||| |
|
|
| T |
6246061 |
aatctaggattaaagtattgctcaagaggctagagtttcttgcagatcaaaagaatatattgggacttcacgaattaagtcgttattattatgaagatgg |
6245962 |
T |
|
| Q |
213 |
agccagc-gatttt--gctacttcattcatggctgaatctatcgtatatggtagagagcgtgaaaaggaggaaatagtcgaatttttactttcagacagt |
309 |
Q |
| |
|
||||||| |||||| || | || || ||||||||||| | ||||||||||||||| ||| || || |||||| | ||||||||||||||||||||| |
|
|
| T |
6245961 |
agccagcagattttcaactgcatctttggtggctgaatctgtgatatatggtagagagcatgagaaagaagaaataattgaatttttactttcagacagt |
6245862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 19 - 149
Target Start/End: Complemental strand, 6266544 - 6266414
Alignment:
| Q |
19 |
gtataagaattagagcaagtattggatgtcattgctactgatgctgcacaacaaaagggaaagatacaacgctttctttcaggttctatcaatcgatttg |
118 |
Q |
| |
|
||||| |||||||| ||| | ||||| ||||||||| ||| ||||| | |||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6266544 |
gtatacgaattagatcaactgttggacatcattgctagtgactctgcaaatcaaaagggaaagatacaacgctttctttcaggttctatcaatcggtttg |
6266445 |
T |
|
| Q |
119 |
aatctaggattaaagtattgctcgagaggct |
149 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |
|
|
| T |
6266444 |
aatctaggattaaagtattgctcaagaggct |
6266414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 25 - 180
Target Start/End: Original strand, 6590532 - 6590687
Alignment:
| Q |
25 |
gaattagagcaagtattggatgtcattgctactgatgctgcacaacaaaagggaaagatacaacgctttctttcaggttctatcaatcga---tttgaat |
121 |
Q |
| |
|
|||||||||||| |||||||||| |||||| |||| ||||||| |||||| ||||||| ||||||||||||| ||| ||| |||||| |||||| |
|
|
| T |
6590532 |
gaattagagcaactattggatgtgattgct---gatgacgcacaaccaaagggcaagatacgacgctttctttcacgttttattaatcgaggatttgaag |
6590628 |
T |
|
| Q |
122 |
ctaggattaaagtattgctcgagaggctagagtttcttgcaaatcaaaaggatagattg |
180 |
Q |
| |
|
|||||||||||| |||| | ||| ||||||||||||||| |||||||||||| |||| |
|
|
| T |
6590629 |
ctaggattaaagcattgatacagaacctagagtttcttgcagatcaaaaggataaattg |
6590687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 174
Target Start/End: Complemental strand, 6143160 - 6143020
Alignment:
| Q |
31 |
gagcaagtattggatgtcattgctactgatgctgcacaacaaaagggaaagatacaacgctttctttcaggttctatcaatcgatttgaatctaggatta |
130 |
Q |
| |
|
|||||| |||||||||| ||||||||||| || ||| | |||||| |||||| |||||||||||| | || ||| ||||||||||||||||| |||| |
|
|
| T |
6143160 |
gagcaactattggatgttattgctactgacgc---acaccgaaaggggaagataagacgctttctttctgcttttattaatcgatttgaatctagaatta |
6143064 |
T |
|
| Q |
131 |
aagtattgctcgagaggctagagtttcttgcaaatcaaaaggat |
174 |
Q |
| |
|
||||| |||| ||||||||||||| | |||| |||||||||| |
|
|
| T |
6143063 |
aagtaatgctgaagaggctagagttccgtgcaggtcaaaaggat |
6143020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 312 - 361
Target Start/End: Complemental strand, 6238173 - 6238124
Alignment:
| Q |
312 |
taatttgttcttaaaattattaaaatatttgcggatgttgtctatctctg |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6238173 |
taatttgttcttaaaattattaaaatatttgcggatgttgtctatctctg |
6238124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 171
Target Start/End: Original strand, 13269768 - 13269917
Alignment:
| Q |
19 |
gtataagaattagagcaagtattggatgtcattgctactgatgctgcacaacaaaagggaaagatacaacgctttctttcaggttctatcaatcgatttg |
118 |
Q |
| |
|
||||| |||||||||||| |||||||||| |||| |||||| || ||||| |||||| |||||| || |||||||| | || ||| |||||||||| |
|
|
| T |
13269768 |
gtatacgaattagagcaactattggatgtgattgttactgacgc---acaacgaaaggggaagataagtcgttttctttctgcttttattaatcgatttg |
13269864 |
T |
|
| Q |
119 |
aatctaggattaaagtattgctcgagaggctagagtttcttgcaaatcaaaag |
171 |
Q |
| |
|
||||||| ||||||| | ||| |||||||||| |||||||||| ||| |||| |
|
|
| T |
13269865 |
aatctagaattaaagcttcgctggagaggctagtgtttcttgcagatctaaag |
13269917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 109 - 175
Target Start/End: Complemental strand, 5250940 - 5250874
Alignment:
| Q |
109 |
aatcgatttgaatctaggattaaagtattgctcgagaggctagagtttcttgcaaatcaaaaggata |
175 |
Q |
| |
|
|||| |||||||||||||||||||| |||||| |||| |||||| ||||||||||| |||||||||| |
|
|
| T |
5250940 |
aatccatttgaatctaggattaaagaattgctagagaagctagaatttcttgcaaagcaaaaggata |
5250874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 6883390 - 6883274
Alignment:
| Q |
19 |
gtataagaattagagcaagtattggatgtcattgctactgatgctgcacaacaaaagggaaagatacaacgctttctttcaggttctatcaatcgatttg |
118 |
Q |
| |
|
||||| |||||||| ||| |||||||||| ||||| ||||| || |||||||| ||| |||||||||||| |||||||||||| ||| |||| || | |
|
|
| T |
6883390 |
gtatacgaattagatcaactattggatgtgattgcgactgacgc---acaacaaatgggcaagatacaacgcattctttcaggttttattaatcaatgtc |
6883294 |
T |
|
| Q |
119 |
aatctaggattaaagtattg |
138 |
Q |
| |
|
||| |||||| |||||||| |
|
|
| T |
6883293 |
aatataggatggaagtattg |
6883274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 114 - 169
Target Start/End: Complemental strand, 6900873 - 6900818
Alignment:
| Q |
114 |
atttgaatctaggattaaagtattgctcgagaggctagagtttcttgcaaatcaaa |
169 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||| ||||| |||||| |
|
|
| T |
6900873 |
atttgaatctaggattaaagtattgctgaagaggctaaagtttattgcagatcaaa |
6900818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 309
Target Start/End: Original strand, 6590755 - 6590810
Alignment:
| Q |
254 |
tatatggtagagagcgtgaaaaggaggaaatagtcgaatttttactttcagacagt |
309 |
Q |
| |
|
||||||||||||||| ||| || ||||||||| | |||||||||||||||||||| |
|
|
| T |
6590755 |
tatatggtagagagcatgagaaagaggaaataattaaatttttactttcagacagt |
6590810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 309
Target Start/End: Complemental strand, 6917734 - 6917679
Alignment:
| Q |
254 |
tatatggtagagagcgtgaaaaggaggaaatagtcgaatttttactttcagacagt |
309 |
Q |
| |
|
||||||||||||||| ||| || ||||||||| | ||||||||||| ||||||||| |
|
|
| T |
6917734 |
tatatggtagagagcatgagaaagaggaaataattgaatttttactatcagacagt |
6917679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 175
Target Start/End: Original strand, 4388195 - 4388261
Alignment:
| Q |
109 |
aatcgatttgaatctaggattaaagtattgctcgagaggctagagtttcttgcaaatcaaaaggata |
175 |
Q |
| |
|
|||| ||||||||||||||| |||| |||||| |||| | |||| |||||||| || |||||||||| |
|
|
| T |
4388195 |
aatccatttgaatctaggatcaaagaattgctagagaagttagaatttcttgcgaagcaaaaggata |
4388261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 171
Target Start/End: Complemental strand, 5268827 - 5268765
Alignment:
| Q |
109 |
aatcgatttgaatctaggattaaagtattgctcgagaggctagagtttcttgcaaatcaaaag |
171 |
Q |
| |
|
|||| |||||| |||||||| |||| |||||| |||| |||||| ||||||||||| |||||| |
|
|
| T |
5268827 |
aatccatttgagtctaggatcaaagaattgctagagaagctagaatttcttgcaaaacaaaag |
5268765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 133
Target Start/End: Original strand, 8568163 - 8568233
Alignment:
| Q |
63 |
tgcacaacaaaagggaaagatacaacgctttctttcaggttctatcaatcgatttgaatctaggattaaag |
133 |
Q |
| |
|
||||||| ||||||||||| |||| ||| |||||||||| || |||||||||||||||||||| |||| |
|
|
| T |
8568163 |
tgcacaaagaaagggaaagacgcaacacttcctttcaggttttactaatcgatttgaatctaggatcaaag |
8568233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 232 - 306
Target Start/End: Original strand, 35139802 - 35139876
Alignment:
| Q |
232 |
tcattcatggctgaatctatcgtatatggtagagagcgtgaaaaggaggaaatagtcgaatttttactttcagac |
306 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||||| ||||||||| || |||||||| |||||||| |
|
|
| T |
35139802 |
tcattcatggctgaatctatcatatatggtagagaacgtgaaaaagaggaaataatcaaatttttattttcagac |
35139876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 180
Target Start/End: Original strand, 13154 - 13222
Alignment:
| Q |
112 |
cgatttgaatctaggattaaagtattgctcgagaggctagagtttcttgcaaatcaaaaggatagattg |
180 |
Q |
| |
|
||||| |||||||||| |||||||||||| |||| ||||||| |||||| |||||||||||| |||| |
|
|
| T |
13154 |
cgattggaatctaggagtaaagtattgctgaggaggttagagttccttgcagatcaaaaggatatattg |
13222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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