View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12419_low_25 (Length: 362)
Name: NF12419_low_25
Description: NF12419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12419_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 48044438 - 48044136
Alignment:
| Q |
1 |
aagcatcttaagcttgggtctcacacatgacacaacctaattgatcaactgcattctcacaaggggtcaaatgtttgtcgaacaggaaaggttggagaaa |
100 |
Q |
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| T |
48044438 |
aagcatcttaagcttgggtctcacacatgacacaacctaattgatcaactgcattctcacaaggggtcaaatgtttgtcgaacaggaaaggttggagaaa |
48044339 |
T |
|
| Q |
101 |
cataggtcccatgaacaatcttgtttcaagcctcaccttactagctattaattgactcggagaattattcaaatcaaattagcgtgacctatctccctct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
48044338 |
cataggtcccatgaacaatcttgtttcaagcctcaccttactagctattaattgactctgagaattattcaaatcaaataagcgtgacctatctccctct |
48044239 |
T |
|
| Q |
201 |
ctatgttgatgtggcattttgccatgttatttaccagcaaataaaatgaataaaagagtgatgtcacgtcaccaaatggcatgtcacaatctgcatcaca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
48044238 |
ctatgttgatgtggcattttgccatgttatttaccagcaaataaaatgaataaaagagtgatggcacgtcaccaaatggcatgtcacaatctgcatcaca |
48044139 |
T |
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| Q |
301 |
aat |
303 |
Q |
| |
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||| |
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| T |
48044138 |
aat |
48044136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 176 - 295
Target Start/End: Complemental strand, 48051958 - 48051839
Alignment:
| Q |
176 |
aaattagcgtgacctatctccctctctatgttgatgtggcattttgccatgttatttaccagcaaataaaatgaataaaagagtgatgtcacgtcaccaa |
275 |
Q |
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|||||||| ||| |||||||||||| |||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
48051958 |
aaattagcatgatctatctccctctatatgctgatgtggcacactgccatgttattttccagcaaataaaatgaataaaagagtgatggcacgtcaccaa |
48051859 |
T |
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| Q |
276 |
atggcatgtcacaatctgca |
295 |
Q |
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|||||||||||||||||||| |
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| T |
48051858 |
atggcatgtcacaatctgca |
48051839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 298 - 341
Target Start/End: Complemental strand, 48044121 - 48044078
Alignment:
| Q |
298 |
acaaatagaatcaattgcatcaatgtgaaaactattaagacgat |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48044121 |
acaaatagaatcaattgcatcaatgtgaaaactattaagacgat |
48044078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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