View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12419_low_26 (Length: 351)
Name: NF12419_low_26
Description: NF12419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12419_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 235 - 336
Target Start/End: Original strand, 3426240 - 3426341
Alignment:
| Q |
235 |
gcattgccaaatggatgagagttcaacaaacatattagatgttgtaccagaaaaaccataaatccaagtctcgttagagtttctcaagaggccagcaaaa |
334 |
Q |
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||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||| |
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| T |
3426240 |
gcattaccaattggatgagagttcagcaaacatattagatgttgtaccagaaaaaccatgaatccaaatctcgttagagtttctcaagaagccagcaaaa |
3426339 |
T |
|
| Q |
335 |
cc |
336 |
Q |
| |
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|| |
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| T |
3426340 |
cc |
3426341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 4 - 292
Target Start/End: Complemental strand, 13098053 - 13097767
Alignment:
| Q |
4 |
acatttgaagccccaaacttaactaatcaatcaacacattcattgtcttccctcaaggtatgggcaaaggagtgtcctatatgaagagaggagggcttct |
103 |
Q |
| |
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||||||| |||| |||| ||||||| || |||| ||||||||||| ||||| |||||| || | ||| ||||| |||| || |||| ||| | || |
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| T |
13098053 |
acatttgtagcctcaaatttaactagtcgatcatcacattcattgccttccgtcaaggcatatgtaaaatagtgtgttata-gaggagatgagagttttc |
13097955 |
T |
|
| Q |
104 |
tactgagagaaagaatagtcccatgaggatgaaaataagagtttatggacatcttcaatcaaatccatagccgctttagagtcagatttcaaaataataa |
203 |
Q |
| |
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|| |||||||||||||||||| | |||||||||||| |||||| ||| ||||||||||||||||||||| | |||||||||| | | |||||||||| |
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| T |
13097954 |
taatgagagaaagaatagtccaacgaggatgaaaattagagtt-atgaacatcttcaatcaaatccataacatttttagagtcaaactcaaaaataataa |
13097856 |
T |
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| Q |
204 |
acatataaccaaggtcccatgctagctgaaggcattgccaaatggatgagagttcaacaaacatattagatgttgtaccagaaaaacca |
292 |
Q |
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| T |
13097855 |
atttatgaccaatgtccgttgccaactgaagacctacccaaatggttgagagttcagcaaatatattagatgttgtaccacaagaacca |
13097767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 4 - 328
Target Start/End: Complemental strand, 13027869 - 13027538
Alignment:
| Q |
4 |
acatttgaagccccaaacttaactaatcaatcaacacattcattgtcttccctcaaggtatgggcaaaggagtgtcctatatgaagagaggagggcttct |
103 |
Q |
| |
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||||||| |||| |||| ||||||| ||||||| ||||||||||| ||||| |||||| || | ||| ||||| ||| || |||| ||| | || |
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| T |
13027869 |
acatttgtagcctcaaatttaactagtcaatcatcacattcattgccttccgtcaaggcatatgtaaaatagtgtgtcata-gaggagatgagagttttc |
13027771 |
T |
|
| Q |
104 |
tactgagagaaagaatagtcccatgaggatgaaaataagagtttatggacatcttcaatcaaatccatagccgctttagagtcagatttcaaaataataa |
203 |
Q |
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| T |
13027770 |
taatgagagaaagaatagtccaacgaggatgaaaattagagtt-atgaacatcttcaatcaaatcgataacatttttagagtcaaactcaaaaataataa |
13027672 |
T |
|
| Q |
204 |
acatataaccaaggtcccatgctagctgaaggcattgccaaatggatgagagttcaacaaacatattagatgttgt---------accagaaaaaccata |
294 |
Q |
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| ||| ||||| |||| ||| | |||||| | | |||||||| |||||||||| |||| |||||||||||||| |||||||||||||| |
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| T |
13027671 |
atttatgaccaatgtccgttgccaactgaagacctacccaaatggttgagagttcagcaaatatattagatgttgtaccacaagaaccagaaaaaccatg |
13027572 |
T |
|
| Q |
295 |
aatccaagtctcgttagagtttctcaagaggcca |
328 |
Q |
| |
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||||||| || | ||||||| ||||||||||||| |
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| T |
13027571 |
aatccaaatcccattagagtctctcaagaggcca |
13027538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 74
Target Start/End: Complemental strand, 34196712 - 34196669
Alignment:
| Q |
31 |
caatcaacacattcattgtcttccctcaaggtatgggcaaagga |
74 |
Q |
| |
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||||| |||||||||||| |||||||||||||||||| |||||| |
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| T |
34196712 |
caatcgacacattcattgccttccctcaaggtatgggaaaagga |
34196669 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 86 - 290
Target Start/End: Original strand, 39175115 - 39175317
Alignment:
| Q |
86 |
gaagagaggagggcttcttactgagagaaagaatagtcccatgaggatgaaaataagagtttatggacatcttcaatcaaatccatagccgctttagagt |
185 |
Q |
| |
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|||||||||| | |||| || |||||||| ||||||| |||||| ||| ||||| ||||| ||| |||||| ||| ||||||| | || |||||||| |
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| T |
39175115 |
gaagagaggaagacttcctaatgagagaa-gaatagttccatgaagatcaaaatcagagtc-atgatcatctttaataaaatccaaaaccagtttagagt |
39175212 |
T |
|
| Q |
186 |
cagatttcaaaataataaacatataaccaaggtcccatgctagctgaaggcattgccaaatggatgagagttcaacaaacatattagatgttgtaccaga |
285 |
Q |
| |
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|| ||| |||||||||| || | | ||||||||| |||| | ||||||| | ||||||||||||| ||| || |||||| |||||||||||||||| | |
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| T |
39175213 |
catattccaaaataatatacttgtgaccaaggtcatatgccaagtgaaggcctcgccaaatggatgatagtccagcaaacaaattagatgttgtaccaca |
39175312 |
T |
|
| Q |
286 |
aaaac |
290 |
Q |
| |
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||||| |
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|
| T |
39175313 |
aaaac |
39175317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 204
Target Start/End: Original strand, 25318378 - 25318473
Alignment:
| Q |
109 |
agagaaagaatagtcccatgaggatg-aaaataagagtttatggacatcttcaatcaaatccatagccgctttagagtcagatttcaaaataataaa |
204 |
Q |
| |
|
||||||| ||||||| |||||||||| ||||| |||| ||||| | ||||||||| |||| || ||| |||||| ||||| ||| ||||||||||| |
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| T |
25318378 |
agagaaataatagtctcatgaggatgaaaaattagag-ttatgaatatcttcaattaaattcaaagcggctttaaagtcaaattctaaaataataaa |
25318473 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 334
Target Start/End: Complemental strand, 46494247 - 46493950
Alignment:
| Q |
32 |
aatcaacacattcattgtcttccctcaaggtatgggcaaaggagt--gtcctatatgaagagaggagggcttcttactgagagaaagaatagtcccatga |
129 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||| ||||||| |||| | || ||||| || |||||||| |||| ||||||||| | ||||| |
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| T |
46494247 |
aatcaacacattcattgtcttatctcaaagtatggataaaggagaccgtccaag--gatgagagaagagcttcttaatgagcaaaagaatagactcatga |
46494150 |
T |
|
| Q |
130 |
ggatgaaaataagagtttatggacatcttcaatcaaatccatagccgctttagagtcagatttcaaaataataaacatataaccaaggtcccatgctagc |
229 |
Q |
| |
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|||||||||| ||| ||||| |||||||||||||||| | |||||||||||||||| |||| |||||| | || ||| ||||| ||| ||||| | |
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| T |
46494149 |
ggatgaaaatcggag-ttatgaacatcttcaatcaaat--agagccgctttagagtcaaattttcaaataagatacttatgaccaa-gtctcatgccaat |
46494054 |
T |
|
| Q |
230 |
tgaaggcattgccaaatggatgagagttcaacaaacatattagat-gttgtaccagaaaaaccataaatccaagtctcgttagagtttctcaagaggcca |
328 |
Q |
| |
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|||| || | ||||||||| | |||||||| |||||||||| ||| |||| || ||||| || |||||||| |||| ||||||| |||||||||| || |
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| T |
46494053 |
tgaatgcctcgccaaatgg-tcagagttcagcaaacatattcgataaatgtatcacaaaaa-caaaaatccaaatctcattagagtctctcaagaggtca |
46493956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 40828172 - 40828208
Alignment:
| Q |
13 |
gccccaaacttaactaatcaatcaacacattcattgt |
49 |
Q |
| |
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||||||||||||| || |||||||||||||||||||| |
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|
| T |
40828172 |
gccccaaacttaattagtcaatcaacacattcattgt |
40828208 |
T |
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