View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12419_low_27 (Length: 349)
Name: NF12419_low_27
Description: NF12419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12419_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 8 - 337
Target Start/End: Complemental strand, 36525963 - 36525635
Alignment:
| Q |
8 |
taaatataattagtccctaaataatataaatatgtcaatttagtctctgctattaagatattaaagactataagggacgaagttaggcactgattattat |
107 |
Q |
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| T |
36525963 |
taaatataattagtccctaaataatataaatatgtcaatttagtctttgctattaagatattaaagactataagggacgaagttaggcactgattattat |
36525864 |
T |
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| Q |
108 |
atttatagagttaagagactgaataggagaaatggtaatagtttagggactaaattgataatttatttgaaaaatgaacttgggaaaggtacgaaggcaa |
207 |
Q |
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| T |
36525863 |
atttatagagtttagagattgaataggagaaatggtaatagtttagggactaaattgataatttatttgaaaaatgaacttgggaaaggtacgaaggcaa |
36525764 |
T |
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| Q |
208 |
tccaccacactactgcaaatcgacaaattatagtacttaaaaacaattaaggaacgtcaagccacagtacaggattaaaagttagtnnnnnnnnncacga |
307 |
Q |
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| T |
36525763 |
tccaccacactactgcaaatcgacaaattatagtacttaaaaacaattaaggaacgtcaagccacagtacaggattaaaagttggt-aaaaaaaacacga |
36525665 |
T |
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| Q |
308 |
gactaggatatgttctattttacacaggtt |
337 |
Q |
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| T |
36525664 |
gactaggatatgttctattttacacaggtt |
36525635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 79
Target Start/End: Complemental strand, 22559574 - 22559536
Alignment:
| Q |
41 |
gtcaatttagtctctgctattaagatattaaagactata |
79 |
Q |
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| T |
22559574 |
gtcaatttagtctctgctattaagatgttagagactata |
22559536 |
T |
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