View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12419_low_28 (Length: 340)
Name: NF12419_low_28
Description: NF12419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12419_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 123 - 325
Target Start/End: Original strand, 11630841 - 11631043
Alignment:
| Q |
123 |
taagttcataacatggtttcatggtgcaggaagtgcagaagtattttaccaattacatactcaacgtttgtcttggaataattgccaatgcacacactgt |
222 |
Q |
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| T |
11630841 |
taagttaataacatggttttatggtgcaggaagtgcagaagtattttaccgattacatactcaatgattgtcttggaataattgccaatgcacacactgt |
11630940 |
T |
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| Q |
223 |
ctttgcagacaaagaacctagaaaagcaatggctgatccatgtgttgagcttgcaaagctattctcaacagcagttgactttccaaaaacaggtatccca |
322 |
Q |
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| T |
11630941 |
ctttgcagacaaagaacctggaaaagcaatggctgatccatgtgttgagcttgcaaagctattctcaacagcagttgactttccaaaaaccggtatccca |
11631040 |
T |
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| Q |
323 |
gca |
325 |
Q |
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||| |
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| T |
11631041 |
gca |
11631043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 128 - 325
Target Start/End: Complemental strand, 11675795 - 11675598
Alignment:
| Q |
128 |
tcataacatggtttcatggtgcaggaagtgcagaagtattttaccaattacatactcaacgtttgtcttggaataattgccaatgcacacactgtctttg |
227 |
Q |
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| T |
11675795 |
tcataacatggttttatggtgcaggaggtggaggagtattttaccaattacatgctcaatgacagtcttggaataatttccaatgcacacactgtctttg |
11675696 |
T |
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| Q |
228 |
cagacaaagaacctagaaaagcaatggctgatccatgtgttgagcttgcaaagctattctcaacagcagttgactttccaaaaacaggtatcccagca |
325 |
Q |
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| T |
11675695 |
cagataaagaacctgctaaagcaatgtctgagccatgtattgaacttgcaaagctattctcaatagcagttgattttccaaaaaccggtatcccagca |
11675598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 127 - 325
Target Start/End: Complemental strand, 11683380 - 11683182
Alignment:
| Q |
127 |
ttcataacatggtttcatggtgcaggaagtgcagaagtattttaccaattacatactcaacgtttgtcttggaataattgccaatgcacacactgtcttt |
226 |
Q |
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| T |
11683380 |
ttcataacatggtttaatgctgcaggaggtggaggaatattttaccaattacatactcaatgacagtcttggaataattgccaatgcacacattgtcttt |
11683281 |
T |
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| Q |
227 |
gcagacaaagaacctagaaaagcaatggctgatccatgtgttgagcttgcaaagctattctcaacagcagttgactttccaaaaacaggtatcccagca |
325 |
Q |
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| T |
11683280 |
gcagataaggaacctggtaaagcaatggctgagccatgtattgaacttgcaaagctattctcagtagcagttgattttccaaaaaccggtatcccagca |
11683182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 131 - 324
Target Start/End: Original strand, 11639611 - 11639804
Alignment:
| Q |
131 |
taacatggtttcatggtgcaggaagtgcagaagtattttaccaattacatactcaacgtttgtcttggaataattgccaatgcacacactgtctttgcag |
230 |
Q |
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| T |
11639611 |
taacatggtttaatggtgcaggaggtggaggagtatttcaccaattatatactcaatgacagtctcggaataattgccaatgcacacacagtctttgcag |
11639710 |
T |
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| Q |
231 |
acaaagaacctagaaaagcaatggctgatccatgtgttgagcttgcaaagctattctcaacagcagttgactttccaaaaacaggtatcccagc |
324 |
Q |
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| T |
11639711 |
ataaagaacctgctaaagcaatgtctgagccatgtatcgagcttgcaaagctattctcaatagcagttgactttccaaagactggtatcccagc |
11639804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 11630532 - 11630631
Alignment:
| Q |
19 |
catgatgtggagattgaggtattgtccattgacctttacatccataggcaatttttcttgtatttccggtatggttttagcaacttatgtaatgtgatct |
118 |
Q |
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| T |
11630532 |
catgatgtggagattgaggtattgtccttttagctttacatccgtaggcaatttttcttgtatattatgtatggttttagcaacttgtgtaatgtgatct |
11630631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 11683724 - 11683629
Alignment:
| Q |
19 |
catgatgtggagattgaggtattgtccattgacctttacatccataggcaatttttcttgtatttccggtatggttttagcaacttatgtaatgtgat |
116 |
Q |
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| T |
11683724 |
catgatgttgagattgaggtatt--cctttgagatttacatccataggagttttttcttgtacttttcgtatggttttagcaacttgtttaatgtgat |
11683629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 11675992 - 11675937
Alignment:
| Q |
19 |
catgatgtggagattgaggtattgtccattgacctttacatccataggcaattttt |
74 |
Q |
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| T |
11675992 |
catgatgtggagattgaggtattgttctttgagatttacattcataggaaattttt |
11675937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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