View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12419_low_30 (Length: 309)

Name: NF12419_low_30
Description: NF12419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12419_low_30
NF12419_low_30
[»] chr5 (24 HSPs)
chr5 (14-260)||(38156186-38156438)
chr5 (12-288)||(38452554-38452840)
chr5 (12-288)||(38170070-38170356)
chr5 (16-269)||(38182249-38182511)
chr5 (16-269)||(38188620-38188882)
chr5 (16-269)||(38209475-38209737)
chr5 (16-269)||(38215845-38216107)
chr5 (14-269)||(38185878-38186141)
chr5 (14-269)||(38212216-38212479)
chr5 (14-207)||(38220599-38220797)
chr5 (112-288)||(38220188-38220371)
chr5 (156-288)||(38443718-38443853)
chr5 (112-207)||(38220381-38220480)
chr5 (112-207)||(38220490-38220589)
chr5 (222-288)||(38220381-38220447)
chr5 (222-288)||(38220599-38220665)
chr5 (233-288)||(38220490-38220545)
chr5 (220-288)||(38182378-38182446)
chr5 (220-288)||(38188685-38188753)
chr5 (220-288)||(38209604-38209672)
chr5 (220-288)||(38215910-38215978)
chr5 (220-290)||(38156240-38156310)
chr5 (138-207)||(38443718-38443787)
chr5 (17-83)||(38443928-38443991)


Alignment Details
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 14 - 260
Target Start/End: Complemental strand, 38156438 - 38156186
Alignment:
Q  14 agataagtgcaagaaatataggagacaaatccatgataaaaaagaaccaatatattactcgatttgaatctgtacattaactacacttcnnnnnnnnntt 113  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||         ||    
T  38156438 agataagtgcaagaaatataggagacaaatccatgataaaaa-gaaccaatatattactcgatttgaatctgtacagtaactacacttcaaaaaaaaatt 38156340  T
Q  114 agagaactacattaggcttaaaaaa----cgcttccaaaacgattttagaatatcttcgaattcatcattcacaacatgaagtccatgaaattcct---t 206  Q
    ||||||||||||||||||| |||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |    
T  38156339 agagaactacattaggcttcaaaaagcaacgcttccaaaacgattttagaatatcttcgaattcatcattcacaacatgaagtccatgaaattccttctt 38156240  T
Q  207 cttagaaaaattgcgcttcaaaaacaattttagaatatcttcaaattcatcatt 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38156239 cttagaaaaattgcgcttcaaaaacaattttagaatatcttcaaattcatcatt 38156186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 12 - 288
Target Start/End: Original strand, 38452554 - 38452840
Alignment:
Q  12 agagataagtgcaagaaatataggagacaaatccatgataaaaaagaaccaatatattactcgatttgaatctgtaca--ttaactacacttcnnnnnnn 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||  |||||||||||||           
T  38452554 agagataagtgcaagaaatataggagacaaatccatgataaaaaagaaccaatatattaatcaatttgaatccgtacaatttaactacacttcaaaaaaa 38452653  T
Q  110 nn-ttagagaactacattaggcttaaaaaa----cgcttccaaaacgattttagaatatcttcgaattcatcattcacaacatgaagtccatgaaattcc 204  Q
       ||||||||||||||||||||| |||||    |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||    
T  38452654 aaattagagaactacattaggcttcaaaaagcaacgcttccaaaacgattttagaatatcttcgaattcatcattcacgacatgtagtccgtgaaaatcc 38452753  T
Q  205 tt---cttagaaaaattgcgcttcaaaaacaattttagaatatcttcaaattcatcattcacgacatgcagtctgtgaaattccttc 288  Q
    ||   ||| |||||||||| | ||||| |||||||||||||||||||||||||||||||||  ||||| |||| | |||||| ||||    
T  38452754 ttcaccttggaaaaattgcacgtcaaatacaattttagaatatcttcaaattcatcattcataacatgtagtccgcgaaatttcttc 38452840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 12 - 288
Target Start/End: Complemental strand, 38170356 - 38170070
Alignment:
Q  12 agagataagtgcaagaaatataggagacaaatccatgataaaaaagaaccaatatattactcgatttgaatctgtaca--ttaactacacttcnnnnnnn 109  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||| |||||  |||||||||||||           
T  38170356 agagataagtgcaagaaatataggagacaaatccatgataaaatagaaccaatatattaatcaatttgaatccgtacaatttaactacacttcaattttt 38170257  T
Q  110 nntt-agagaactacattaggcttaaaaaac----gcttccaaaacgattttagaatatcttcgaattcatcattcacaacatgaagtccatgaaattcc 204  Q
      || ||||||||||||||| ||| |||||     ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||    
T  38170256 tttttagagaactacattagccttcaaaaagcaatgcttccaaaacgattttagaatatcttcgaattcatcattcacgacatgcagtccgtgaaaatcc 38170157  T
Q  205 tt---cttagaaaaattgcgcttcaaaaacaattttagaatatcttcaaattcatcattcacgacatgcagtctgtgaaattccttc 288  Q
    ||   ||| |||||||||| | ||||| |||||||||||||||||||||||||||||||||| ||||| |||| | |||||| ||||    
T  38170156 ttcaccttggaaaaattgcacgtcaaatacaattttagaatatcttcaaattcatcattcacaacatgtagtccgcgaaatttcttc 38170070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 269
Target Start/End: Original strand, 38182249 - 38182511
Alignment:
Q  16 ataagtgcaagaaatataggagacaaatccatgataaaaaagaaccaatatattactcgatttgaatctgtaca--ttaactacacttcnnnnnnnnntt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||| |||||  |||||||||||||         ||    
T  38182249 ataagtgcaagaaatataggagacaaatccatgataaaaaagaaccaatgtattaatcaatttgaatccgtacaatttaactacacttcaaaaaaaattt 38182348  T
Q  114 agagaactacattaggcttaaaaaa----cgcttccaaaacgattttagaatatcttcgaattcatcattcacaacatgaagtccatgaaattccttc-- 207  Q
    ||| ||||| ||||||||| |||||    ||||||||||||||||||||||||||||| |||||||| ||||| ||||| ||||| ||||| ||||||      
T  38182349 agaaaactatattaggcttcaaaaagcaacgcttccaaaacgattttagaatatcttcaaattcatcgttcacgacatgcagtccttgaaagtccttcac 38182448  T
Q  208 -ttagaaaaattgcgcttcaaaaacaattttagaatatcttcaaattcatcattcacgacatg 269  Q
     ||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||    
T  38182449 cttagaaaaattgcgcttcaaatataattttagaatatcttcaaattcatcattcacaacatg 38182511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 269
Target Start/End: Complemental strand, 38188882 - 38188620
Alignment:
Q  16 ataagtgcaagaaatataggagacaaatccatgataaaaaagaaccaatatattactcgatttgaatctgtaca--ttaactacacttcnnnnnnnnntt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||| |||||  |||||||||||||         ||    
T  38188882 ataagtgcaagaaatataggagacaaatccatgataaaaaagaaccaatgtattaatcaatttgaatccgtacaatttaactacacttcaaaaaaaattt 38188783  T
Q  114 agagaactacattaggcttaaaaaa----cgcttccaaaacgattttagaatatcttcgaattcatcattcacaacatgaagtccatgaaattccttc-- 207  Q
    ||| ||||| ||||||||| |||||    ||||||||||||||||||||||||||||| |||||||| ||||| ||||| ||||| ||||| ||||||      
T  38188782 agaaaactatattaggcttcaaaaagcaacgcttccaaaacgattttagaatatcttcaaattcatcgttcacgacatgcagtccttgaaagtccttcac 38188683  T
Q  208 -ttagaaaaattgcgcttcaaaaacaattttagaatatcttcaaattcatcattcacgacatg 269  Q
     ||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||    
T  38188682 cttagaaaaattgcgcttcaaatataattttagaatatcttcaaattcatcattcacaacatg 38188620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 269
Target Start/End: Original strand, 38209475 - 38209737
Alignment:
Q  16 ataagtgcaagaaatataggagacaaatccatgataaaaaagaaccaatatattactcgatttgaatctgtaca--ttaactacacttcnnnnnnnnntt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||| |||||  |||||||||||||         ||    
T  38209475 ataagtgcaagaaatataggagacaaatccatgataaaaaagaaccaatgtattaatcaatttgaatccgtacaatttaactacacttcaaaaaaaattt 38209574  T
Q  114 agagaactacattaggcttaaaaaa----cgcttccaaaacgattttagaatatcttcgaattcatcattcacaacatgaagtccatgaaattccttc-- 207  Q
    ||| ||||| ||||||||| |||||    ||||||||||||||||||||||||||||| |||||||| ||||| ||||| ||||| ||||| ||||||      
T  38209575 agaaaactatattaggcttcaaaaagcaacgcttccaaaacgattttagaatatcttcaaattcatcgttcacgacatgcagtccttgaaagtccttcac 38209674  T
Q  208 -ttagaaaaattgcgcttcaaaaacaattttagaatatcttcaaattcatcattcacgacatg 269  Q
     ||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||    
T  38209675 cttagaaaaattgcgcttcaaatataattttagaatatcttcaaattcatcattcacaacatg 38209737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 16 - 269
Target Start/End: Complemental strand, 38216107 - 38215845
Alignment:
Q  16 ataagtgcaagaaatataggagacaaatccatgataaaaaagaaccaatatattactcgatttgaatctgtaca--ttaactacacttcnnnnnnnnntt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||| |||||  |||||||||||||         ||    
T  38216107 ataagtgcaagaaatataggagacaaatccatgataaaaaagaaccaatgtattaatcaatttgaatccgtacaatttaactacacttcaaaaaaaattt 38216008  T
Q  114 agagaactacattaggcttaaaaaa----cgcttccaaaacgattttagaatatcttcgaattcatcattcacaacatgaagtccatgaaattccttc-- 207  Q
    ||| ||||| ||||||||| |||||    ||||||||||||||||||||||||||||| |||||||| ||||| ||||| ||||| ||||| ||||||      
T  38216007 agaaaactatattaggcttcaaaaagcaacgcttccaaaacgattttagaatatcttcaaattcatcgttcacgacatgcagtccttgaaagtccttcac 38215908  T
Q  208 -ttagaaaaattgcgcttcaaaaacaattttagaatatcttcaaattcatcattcacgacatg 269  Q
     ||| ||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||    
T  38215907 cttaaaaaaattgcgcttcaaatataattttagaatatcttcaaattcatcattcacaacatg 38215845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 14 - 269
Target Start/End: Complemental strand, 38186141 - 38185878
Alignment:
Q  14 agataagtgcaagaaatataggagacaaatccatgataaaaaagaaccaatatattactcgatttgaatctgtaca--ttaactacacttcnnnnnnnnn 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||| |||||  |||||||||||||             
T  38186141 agataagtgcaagaaatataggagacaaatccatgataaaaaagaaccaatgtattaatcaatttgaatccgtacaatttaactacacttcaaaaaaaat 38186042  T
Q  112 ttagagaactacattaggcttaaaaaa----cgcttccaaaacgattttagaatatcttcgaattcatcattcacaacatgaagtccatgaaattccttc 207  Q
    ||||| || || ||||||||| |||||    |||||||||||| |||||||||||||||| |||||||| ||||| |||| | |||| ||||| ||||||    
T  38186041 ttagaaaattatattaggcttcaaaaagcaacgcttccaaaacaattttagaatatcttcaaattcatcgttcacgacatca-gtccgtgaaagtccttc 38185943  T
Q  208 ---ttagaaaaattgcgcttcaaaaacaattttagaatatcttcaaattcatcattcacgacatg 269  Q
       ||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||    
T  38185942 accttagaaaaattgcgcttcaaatataattttagaatatcttcaaattcatcattcacaacatg 38185878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 14 - 269
Target Start/End: Original strand, 38212216 - 38212479
Alignment:
Q  14 agataagtgcaagaaatataggagacaaatccatgataaaaaagaaccaatatattactcgatttgaatctgtaca--ttaactacacttcnnnnnnnnn 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||| |||||  |||||||||||||             
T  38212216 agataagtgcaagaaatataggagacaaatccatgataaaaaagaaccaatgtattaatcaatttgaatccgtacaatttaactacacttcaaaaaaaat 38212315  T
Q  112 ttagagaactacattaggcttaaaaaa----cgcttccaaaacgattttagaatatcttcgaattcatcattcacaacatgaagtccatgaaattccttc 207  Q
    ||||| || || ||||||||| |||||    |||||||||||| |||||||||||||||| |||||||| ||||| |||| | |||| ||||| ||||||    
T  38212316 ttagaaaattatattaggcttcaaaaagcaacgcttccaaaacaattttagaatatcttcaaattcatcgttcacgacatca-gtccgtgaaagtccttc 38212414  T
Q  208 ---ttagaaaaattgcgcttcaaaaacaattttagaatatcttcaaattcatcattcacgacatg 269  Q
       ||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||    
T  38212415 accttagaaaaattgcgcttcaaatataattttagaatatcttcaaattcatcattcacaacatg 38212479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 14 - 207
Target Start/End: Complemental strand, 38220797 - 38220599
Alignment:
Q  14 agataagtgcaagaaatataggagacaaatccatgataaaaaagaaccaatatattactcgatttgaatctgtac-attaactacacttcnnnnnnnnnt 112  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||| |||| ||| ||||||||||         |    
T  38220797 agataagtgcaagaaatataggagacaaatccatgataaaatagaaccaatatattaatcaatttgaatccgtacaattgactacacttcaaaagaaaat 38220698  T
Q  113 tagagaactacattaggcttaaaa----aacgcttccaaaacgattttagaatatcttcgaattcatcattcacaacatgaagtccatgaaattccttc 207  Q
    ||||||||||||||||| || |||    ||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||    
T  38220697 tagagaactacattaggtttcaaaaagcaacacttccaaaacgattttagaatatcttcgaattcatcattcacgacatgcagtccgtgaaattccttc 38220599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 112 - 288
Target Start/End: Complemental strand, 38220371 - 38220188
Alignment:
Q  112 ttagagaactacattaggcttaaaaaa----cgcttccaaaacgattttagaatatcttcgaattcatcattcacaacatgaagtccatgaaattcctt- 206  Q
    |||||||||||||||||| || |||||    | |||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||     
T  38220371 ttagagaactacattaggtttcaaaaagcaacacttccaaaacgattttagaatatcttcgaattcatcattcacgacatgcagtccgtgaaattccttc 38220272  T
Q  207 --cttagaaaaattgcgcttcaaaaacaattttagaatatcttcaaattcatcattcacgacatgcagtctgtgaaattccttc 288  Q
      |||||||||||||| | ||||| | |||||||||||||||||||||||||||||||  ||||| |||| | |||||| ||||    
T  38220271 gccttagaaaaattgcacgtcaaataaaattttagaatatcttcaaattcatcattcataacatgtagtccgcgaaatttcttc 38220188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 156 - 288
Target Start/End: Complemental strand, 38443853 - 38443718
Alignment:
Q  156 tagaatatcttcgaattcatcattcacaacatgaagtccatgaaattccttctta---gaaaaattgcgcttcaaaaacaattttagaatatcttcaaat 252  Q
    ||||||||||||||||||||| ||||| |  || ||||||||||||||||||||    |||||||| ||||||||||||| |||||||||||||||||||    
T  38443853 tagaatatcttcgaattcatcgttcacgatgtgtagtccatgaaattccttcttctttgaaaaattacgcttcaaaaacagttttagaatatcttcaaat 38443754  T
Q  253 tcatcattcacgacatgcagtctgtgaaattccttc 288  Q
    ||||||||||||| ||||||||  ||||||| ||||    
T  38443753 tcatcattcacgatatgcagtccatgaaattgcttc 38443718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 112 - 207
Target Start/End: Complemental strand, 38220480 - 38220381
Alignment:
Q  112 ttagagaactacattaggcttaaaaaa----cgcttccaaaacgattttagaatatcttcgaattcatcattcacaacatgaagtccatgaaattccttc 207  Q
    |||||||||||||||||| || |||||    | |||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||    
T  38220480 ttagagaactacattaggtttcaaaaagcaacacttccaaaacgattttagaatatcttcgaattcatcattcacgacatgcagtccgtgaaattccttc 38220381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 112 - 207
Target Start/End: Complemental strand, 38220589 - 38220490
Alignment:
Q  112 ttagagaactacattaggcttaaaaaa----cgcttccaaaacgattttagaatatcttcgaattcatcattcacaacatgaagtccatgaaattccttc 207  Q
    |||||||||||||||||| || |||||    | ||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||    
T  38220589 ttagagaactacattaggtttcaaaaagcaacacttccaaaatgattttagaatatcttcgaattcatcattcacgacatgcagtccgtgaaattccttc 38220490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 222 - 288
Target Start/End: Complemental strand, 38220447 - 38220381
Alignment:
Q  222 cttcaaaaacaattttagaatatcttcaaattcatcattcacgacatgcagtctgtgaaattccttc 288  Q
    |||| ||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  38220447 cttccaaaacgattttagaatatcttcgaattcatcattcacgacatgcagtccgtgaaattccttc 38220381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 222 - 288
Target Start/End: Complemental strand, 38220665 - 38220599
Alignment:
Q  222 cttcaaaaacaattttagaatatcttcaaattcatcattcacgacatgcagtctgtgaaattccttc 288  Q
    |||| ||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  38220665 cttccaaaacgattttagaatatcttcgaattcatcattcacgacatgcagtccgtgaaattccttc 38220599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 38220545 - 38220490
Alignment:
Q  233 attttagaatatcttcaaattcatcattcacgacatgcagtctgtgaaattccttc 288  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  38220545 attttagaatatcttcgaattcatcattcacgacatgcagtccgtgaaattccttc 38220490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 38182378 - 38182446
Alignment:
Q  220 cgcttcaaaaacaattttagaatatcttcaaattcatcattcacgacatgcagtctgtgaaattccttc 288  Q
    |||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||  ||||| ||||||    
T  38182378 cgcttccaaaacgattttagaatatcttcaaattcatcgttcacgacatgcagtccttgaaagtccttc 38182446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 38188753 - 38188685
Alignment:
Q  220 cgcttcaaaaacaattttagaatatcttcaaattcatcattcacgacatgcagtctgtgaaattccttc 288  Q
    |||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||  ||||| ||||||    
T  38188753 cgcttccaaaacgattttagaatatcttcaaattcatcgttcacgacatgcagtccttgaaagtccttc 38188685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 38209604 - 38209672
Alignment:
Q  220 cgcttcaaaaacaattttagaatatcttcaaattcatcattcacgacatgcagtctgtgaaattccttc 288  Q
    |||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||  ||||| ||||||    
T  38209604 cgcttccaaaacgattttagaatatcttcaaattcatcgttcacgacatgcagtccttgaaagtccttc 38209672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 38215978 - 38215910
Alignment:
Q  220 cgcttcaaaaacaattttagaatatcttcaaattcatcattcacgacatgcagtctgtgaaattccttc 288  Q
    |||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||  ||||| ||||||    
T  38215978 cgcttccaaaacgattttagaatatcttcaaattcatcgttcacgacatgcagtccttgaaagtccttc 38215910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 220 - 290
Target Start/End: Complemental strand, 38156310 - 38156240
Alignment:
Q  220 cgcttcaaaaacaattttagaatatcttcaaattcatcattcacgacatgcagtctgtgaaattccttctt 290  Q
    |||||| ||||| |||||||||||||||| |||||||||||||| ||||| ||||  ||||||||||||||    
T  38156310 cgcttccaaaacgattttagaatatcttcgaattcatcattcacaacatgaagtccatgaaattccttctt 38156240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 207
Target Start/End: Complemental strand, 38443787 - 38443718
Alignment:
Q  138 acgcttccaaaacgattttagaatatcttcgaattcatcattcacaacatgaagtccatgaaattccttc 207  Q
    ||||||| |||||  ||||||||||||||| |||||||||||||| | ||| ||||||||||||| ||||    
T  38443787 acgcttcaaaaacagttttagaatatcttcaaattcatcattcacgatatgcagtccatgaaattgcttc 38443718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 38443991 - 38443928
Alignment:
Q  17 taagtgcaagaaatataggagacaaatccatgataaaaaagaaccaatatattactcgatttgaatc 83  Q
    |||||| |||||||||| |||||| |||||||||||||   ||||||||||||| |  |||||||||    
T  38443991 taagtggaagaaatatatgagacagatccatgataaaa---aaccaatatattaataaatttgaatc 38443928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University