View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12419_low_37 (Length: 284)

Name: NF12419_low_37
Description: NF12419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12419_low_37
NF12419_low_37
[»] chr6 (9 HSPs)
chr6 (20-274)||(9411955-9412209)
chr6 (52-98)||(28935345-28935391)
chr6 (51-102)||(6410698-6410749)
chr6 (127-174)||(6596310-6596357)
chr6 (51-86)||(7132324-7132359)
chr6 (51-86)||(7135247-7135282)
chr6 (51-86)||(7138170-7138205)
chr6 (51-101)||(6423909-6423959)
chr6 (51-92)||(6395550-6395591)
[»] chr1 (4 HSPs)
chr1 (55-274)||(7555023-7555248)
chr1 (119-168)||(9581627-9581676)
chr1 (119-168)||(9587198-9587247)
chr1 (140-173)||(52094092-52094125)
[»] chr4 (7 HSPs)
chr4 (20-179)||(1755479-1755641)
chr4 (22-92)||(661871-661944)
chr4 (39-92)||(553772-553828)
chr4 (140-189)||(2373565-2373614)
chr4 (114-179)||(7225225-7225290)
chr4 (133-177)||(659977-660021)
chr4 (58-86)||(55907684-55907712)
[»] chr8 (4 HSPs)
chr8 (60-179)||(32151894-32152013)
chr8 (22-101)||(17642905-17642987)
chr8 (139-179)||(18314728-18314768)
chr8 (139-179)||(14004069-14004109)
[»] chr7 (4 HSPs)
chr7 (22-179)||(7977799-7977959)
chr7 (51-101)||(10615717-10615767)
chr7 (38-101)||(10169036-10169102)
chr7 (38-101)||(10176561-10176627)
[»] chr3 (1 HSPs)
chr3 (137-179)||(51763487-51763529)
[»] chr2 (1 HSPs)
chr2 (58-86)||(1036620-1036648)


Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 20 - 274
Target Start/End: Complemental strand, 9412209 - 9411955
Alignment:
Q  20 ttaatctctccaaccatcgcaccattcccgctgggttgcgagctttctcccaaaatattacaactttaacctcattcacttgctcaagaatgggttctat 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  9412209 ttaatctctccaaccatcgcaccattcccgctgggttgcgagctttctcccaaaatattacaactttaacctcattcacttcctcaagaatgggttctat 9412110  T
Q  120 caatagcaatgacttgttactcattgctgaatgtttccctttgcttgaagaactcgacctgtgttatccccgtaaatttaaggatcatagctttcttaat 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9412109 caatagcaatgacttgttactcattgctgaatgtttccctttgcttgaagaactcaacctgtgttatccccgtaaatttaaggatcatagctttcttaat 9412010  T
Q  220 agggtagagactctttcattgacacttttcaaactcaccaagattaatctctctg 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9412009 agggtagagactctttcattgacacttttcaaactcaccaagattaatctctctg 9411955  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 28935391 - 28935345
Alignment:
Q  52 gggttgcgagctttctcccaaaatattacaactttaacctcattcac 98  Q
    ||||||||||| ||||||||||| |||||||||||||||||| ||||    
T  28935391 gggttgcgagccttctcccaaaacattacaactttaacctcactcac 28935345  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 102
Target Start/End: Complemental strand, 6410749 - 6410698
Alignment:
Q  51 tgggttgcgagctttctcccaaaatattacaactttaacctcattcacttgc 102  Q
    |||||||| || |||||||||||| ||||||||||| ||||| |||||||||    
T  6410749 tgggttgcaagttttctcccaaaacattacaactttgacctctttcacttgc 6410698  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 174
Target Start/End: Original strand, 6596310 - 6596357
Alignment:
Q  127 aatgacttgttactcattgctgaatgtttccctttgcttgaagaactc 174  Q
    ||||||||||||||||||||||| |||||||| |||||  ||||||||    
T  6596310 aatgacttgttactcattgctgattgtttcccattgctcaaagaactc 6596357  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 86
Target Start/End: Complemental strand, 7132359 - 7132324
Alignment:
Q  51 tgggttgcgagctttctcccaaaatattacaacttt 86  Q
    |||||||||||||||||||||||| |||||||||||    
T  7132359 tgggttgcgagctttctcccaaaacattacaacttt 7132324  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 86
Target Start/End: Complemental strand, 7135282 - 7135247
Alignment:
Q  51 tgggttgcgagctttctcccaaaatattacaacttt 86  Q
    |||||||||||||||||||||||| |||||||||||    
T  7135282 tgggttgcgagctttctcccaaaacattacaacttt 7135247  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 86
Target Start/End: Complemental strand, 7138205 - 7138170
Alignment:
Q  51 tgggttgcgagctttctcccaaaatattacaacttt 86  Q
    |||||||||||||||||||||||| |||||||||||    
T  7138205 tgggttgcgagctttctcccaaaacattacaacttt 7138170  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 101
Target Start/End: Complemental strand, 6423959 - 6423909
Alignment:
Q  51 tgggttgcgagctttctcccaaaatattacaactttaacctcattcacttg 101  Q
    |||||||||||||||||||||||| || |||||||| |||||  |||||||    
T  6423959 tgggttgcgagctttctcccaaaacataacaactttgacctctctcacttg 6423909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 92
Target Start/End: Complemental strand, 6395591 - 6395550
Alignment:
Q  51 tgggttgcgagctttctcccaaaatattacaactttaacctc 92  Q
    |||||||| |||| |||||||||||||||||||||| |||||    
T  6395591 tgggttgcaagctctctcccaaaatattacaactttgacctc 6395550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 55 - 274
Target Start/End: Complemental strand, 7555248 - 7555023
Alignment:
Q  55 ttgcgagctttctcccaaaatattacaactttaacctcattcacttgctcaagaatgggttctatcaatagcaatgacttgttactcattgctgaatgtt 154  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| || | ||||| |||||||||||||||||||||||||||||||||||||||||    
T  7555248 ttgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgtt 7555149  T
Q  155 tccctttgcttgaagaactcgacctgtgttatccccg---taaatttaaggatcatag---ctttcttaatagggtagagactctttcattgacactttt 248  Q
    |||||||||| ||||||||| ||||| ||||||||||   ||||||||||||||||||   ||| |||||| || | ||||||||||||||| ||||||     
T  7555148 tccctttgctcgaagaactcaacctgggttatccccgtaataaatttaaggatcatagtaacttccttaatgggttggagactctttcattggcactttc 7555049  T
Q  249 caaactcaccaagattaatctctctg 274  Q
    ||||||||||| ||||||||||||||    
T  7555048 caaactcaccaggattaatctctctg 7555023  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 168
Target Start/End: Complemental strand, 9581676 - 9581627
Alignment:
Q  119 tcaatagcaatgacttgttactcattgctgaatgtttccctttgcttgaa 168  Q
    ||||||| ||||||||||| |||||||| |||||||| ||||| ||||||    
T  9581676 tcaatagtaatgacttgttcctcattgccgaatgttttcctttacttgaa 9581627  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 168
Target Start/End: Complemental strand, 9587247 - 9587198
Alignment:
Q  119 tcaatagcaatgacttgttactcattgctgaatgtttccctttgcttgaa 168  Q
    ||||||| ||||||||||| ||||||||  ||||||||||||| ||||||    
T  9587247 tcaatagtaatgacttgttcctcattgccaaatgtttccctttacttgaa 9587198  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 173
Target Start/End: Complemental strand, 52094125 - 52094092
Alignment:
Q  140 tcattgctgaatgtttccctttgcttgaagaact 173  Q
    |||||||||||||||||||||| |||||||||||    
T  52094125 tcattgctgaatgtttccctttccttgaagaact 52094092  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 179
Target Start/End: Complemental strand, 1755641 - 1755479
Alignment:
Q  20 ttaatctctccaaccatcgcaccattcccgct---gggttgcgagctttctcccaaaatattacaactttaacctcattcacttgctcaagaatgggttc 116  Q
    |||||||||||||||| | | |||||||| |    ||||||| ||||||||| ||||| ||||||||||| |||||  |||| || || |  || | |      
T  1755641 ttaatctctccaaccaacacgccattcccaccaaagggttgcaagctttctctcaaaagattacaactttgacctctctcacatgttccaacatcgctca 1755542  T
Q  117 tatcaatagcaatgacttgttactcattgctgaatgtttccctttgcttgaagaactcgacct 179  Q
    | || ||| ||||||||| || ||||||||||| |||||||||||||||||||||||| ||||    
T  1755541 tctccataccaatgacttcttcctcattgctgactgtttccctttgcttgaagaactcaacct 1755479  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 92
Target Start/End: Complemental strand, 661944 - 661871
Alignment:
Q  22 aatctctccaaccatcgcaccattcccgct---gggttgcgagctttctcccaaaatattacaactttaacctc 92  Q
    ||||||||||||||   |||||||||||||   || |||||||||||||||||| |||||||||||||||||||    
T  661944 aatctctccaaccaaaccaccattcccgctaatggtttgcgagctttctcccaatatattacaactttaacctc 661871  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 553828 - 553772
Alignment:
Q  39 caccattcccgc---tgggttgcgagctttctcccaaaatattacaactttaacctc 92  Q
    ||||||||||||   |||||||||||||||||||||||| ||||||||||| |||||    
T  553828 caccattcccgcaaatgggttgcgagctttctcccaaaacattacaactttgacctc 553772  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 189
Target Start/End: Original strand, 2373565 - 2373614
Alignment:
Q  140 tcattgctgaatgtttccctttgcttgaagaactcgacctgtgttatccc 189  Q
    |||||||||| |||||||||||||| |||||||| ||| || ||||||||    
T  2373565 tcattgctgattgtttccctttgctcgaagaacttgacttgagttatccc 2373614  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 179
Target Start/End: Original strand, 7225225 - 7225290
Alignment:
Q  114 ttctatcaatagcaatgacttgttactcattgctgaatgtttccctttgcttgaagaactcgacct 179  Q
    |||| ||| ||||| |||| |||| ||||| || || |||||||||||||| ||||||||||||||    
T  7225225 ttctgtcactagcactgacatgttcctcatcgcggattgtttccctttgctcgaagaactcgacct 7225290  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 177
Target Start/End: Complemental strand, 660021 - 659977
Alignment:
Q  133 ttgttactcattgctgaatgtttccctttgcttgaagaactcgac 177  Q
    ||||| ||||| ||||| ||||||||||||||||| |||||||||    
T  660021 ttgtttctcatagctgattgtttccctttgcttgacgaactcgac 659977  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 86
Target Start/End: Original strand, 55907684 - 55907712
Alignment:
Q  58 cgagctttctcccaaaatattacaacttt 86  Q
    |||||||||||||||||||||||||||||    
T  55907684 cgagctttctcccaaaatattacaacttt 55907712  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 179
Target Start/End: Complemental strand, 32152013 - 32151894
Alignment:
Q  60 agctttctcccaaaatattacaactttaacctcattcacttgctcaagaatgggttctatcaatagcaatgacttgttactcattgctgaatgtttccct 159  Q
    ||||||||||||||| ||||||||||| |||||  ||||||| ||  | ||   |||| ||||| |||  |||||||| |||||||| || |||||||||    
T  32152013 agctttctcccaaaacattacaactttgacctctctcacttgttctcgtatttattctttcaatggcaccgacttgttcctcattgccgattgtttccct 32151914  T
Q  160 ttgcttgaagaactcgacct 179  Q
    ||||| |||||||| |||||    
T  32151913 ttgctcgaagaacttgacct 32151894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 101
Target Start/End: Original strand, 17642905 - 17642987
Alignment:
Q  22 aatctctccaaccatcgcaccattcccgc---tgggttgcgagctttctcccaaaatattacaactttaacctcattcacttg 101  Q
    |||||||||||||||| |||||||||| |   |||||| | |||||||||||| |||||||||||||| |||||  |||||||    
T  17642905 aatctctccaaccatctcaccattcccaccaatgggttacaagctttctcccagaatattacaactttgacctctctcacttg 17642987  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 18314728 - 18314768
Alignment:
Q  139 ctcattgctgaatgtttccctttgcttgaagaactcgacct 179  Q
    ||||||||||| |||||||||||||| ||||||||||||||    
T  18314728 ctcattgctgattgtttccctttgctcgaagaactcgacct 18314768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 14004109 - 14004069
Alignment:
Q  139 ctcattgctgaatgtttccctttgcttgaagaactcgacct 179  Q
    ||||||||||| ||||| |||||||| ||||||||||||||    
T  14004109 ctcattgctgattgttttcctttgctagaagaactcgacct 14004069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 179
Target Start/End: Complemental strand, 7977959 - 7977799
Alignment:
Q  22 aatctctccaaccatcgcaccattcccgct---gggttgcgagctttctcccaaaatattacaactttaacctcattcacttgctcaagaatgggttcta 118  Q
    |||||||||||||| |  |||||||| |||   ||||||| || |||||||||||||||| ||||||| |||||| |||  || || |  || |  ||||    
T  7977959 aatctctccaaccaccctaccattccggcttatgggttgccagttttctcccaaaatattgcaactttgacctcactcaaatgttctaacattgaatcta 7977860  T
Q  119 tcaatagcaatgacttgttactcattgctgaatgtttccctttgcttgaagaactcgacct 179  Q
    | |||| |||  || |||| ||||| || || |||||||||||||||||||||||||||||    
T  7977859 ttaatatcaaccacatgtttctcatagcagattgtttccctttgcttgaagaactcgacct 7977799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 101
Target Start/End: Complemental strand, 10615767 - 10615717
Alignment:
Q  51 tgggttgcgagctttctcccaaaatattacaactttaacctcattcacttg 101  Q
    |||||| ||||||||||||||||| ||||||||||| |||||  |||||||    
T  10615767 tgggttacgagctttctcccaaaagattacaactttgacctctctcacttg 10615717  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 101
Target Start/End: Original strand, 10169036 - 10169102
Alignment:
Q  38 gcaccattcccgc---tgggttgcgagctttctcccaaaatattacaactttaacctcattcacttg 101  Q
    |||||||||||||   ||||||||||| |||||| |||||||||| |||||| |||||  |||||||    
T  10169036 gcaccattcccgcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcacttg 10169102  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 101
Target Start/End: Original strand, 10176561 - 10176627
Alignment:
Q  38 gcaccattcccgc---tgggttgcgagctttctcccaaaatattacaactttaacctcattcacttg 101  Q
    |||||||||||||   ||||||||||| |||||| |||||||||| |||||| |||||  |||||||    
T  10176561 gcaccattcccgcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcacttg 10176627  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 179
Target Start/End: Original strand, 51763487 - 51763529
Alignment:
Q  137 tactcattgctgaatgtttccctttgcttgaagaactcgacct 179  Q
    |||||||||| ||||||||||| ||||| ||||||||||||||    
T  51763487 tactcattgcggaatgtttcccattgctcgaagaactcgacct 51763529  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 86
Target Start/End: Original strand, 1036620 - 1036648
Alignment:
Q  58 cgagctttctcccaaaatattacaacttt 86  Q
    |||||||||||||||||||||||||||||    
T  1036620 cgagctttctcccaaaatattacaacttt 1036648  T

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