View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12419_low_39 (Length: 275)
Name: NF12419_low_39
Description: NF12419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12419_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 114; Significance: 7e-58; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 17 - 161
Target Start/End: Original strand, 38156562 - 38156707
Alignment:
| Q |
17 |
ttaataaaatatttgtttgtatttgaaattaacagataacaaatgaaatcaatgtatgatacggaagtaaaattttactgctctatatgtttgttatgga |
116 |
Q |
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| T |
38156562 |
ttaataaaatatttgtttgtatttgaaattaacagataacaaatgaaatcaatgtatgatacggaagtaaaattttactgctctatatgtttgttatgga |
38156661 |
T |
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| Q |
117 |
agtaa-nnnnnnnnggtaaatggtcactattatggaagtgaaattt |
161 |
Q |
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| T |
38156662 |
agtaatttttttttggtaaatggtcactattatggaagtgaaattt |
38156707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 154 - 264
Target Start/End: Complemental strand, 38178574 - 38178464
Alignment:
| Q |
154 |
tgaaattttgatactttatggaagtgaaatttcatttacagatgacagcttcatgattcaaaacctcctgtctttaataacttccttcagttaactagag |
253 |
Q |
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| T |
38178574 |
tgaaattttggtgctttatgaaagtgaaatttcattaacagatgacagcttcatgattcaaaacctcctgtctttaataacttccttcagttaactagag |
38178475 |
T |
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| Q |
254 |
tatcagacaca |
264 |
Q |
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| T |
38178474 |
tattagacaca |
38178464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 154 - 264
Target Start/End: Complemental strand, 38205798 - 38205688
Alignment:
| Q |
154 |
tgaaattttgatactttatggaagtgaaatttcatttacagatgacagcttcatgattcaaaacctcctgtctttaataacttccttcagttaactagag |
253 |
Q |
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| T |
38205798 |
tgaaattttggtgctttatgaaagtgaaatttcattaacagatgacagcttcatgattcaaaacctcctgtctttaataacttccttcagttaactagag |
38205699 |
T |
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| Q |
254 |
tatcagacaca |
264 |
Q |
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| T |
38205698 |
tattagacaca |
38205688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 169 - 250
Target Start/End: Original strand, 38156691 - 38156772
Alignment:
| Q |
169 |
ttatggaagtgaaatttcatttacagatgacagcttcatgattcaaaacctcctgtctttaataacttccttcagttaacta |
250 |
Q |
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| T |
38156691 |
ttatggaagtgaaatttcattaacagatgacagcttcatgattcaaaacctcctgtctttaataacttccttcagttaacta |
38156772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 169 - 250
Target Start/End: Original strand, 38221020 - 38221101
Alignment:
| Q |
169 |
ttatggaagtgaaatttcatttacagatgacagcttcatgattcaaaacctcctgtctttaataacttccttcagttaacta |
250 |
Q |
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| T |
38221020 |
ttatgaaagtgaaatttcattaacagatgacagcttcatgattcaaaacctcctgtctttaataacttccttcagttaacta |
38221101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 38220907 - 38220967
Alignment:
| Q |
42 |
aaattaacagataacaaatgaaatcaatgtatgatacggaagtaaaattttactgctctat |
102 |
Q |
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| T |
38220907 |
aaattaacagaaaacaaatgaaatcaatgtattttacccaagtgaaattttactgctctat |
38220967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 38444083 - 38444144
Alignment:
| Q |
30 |
tgtttgtatttgaaattaacagataacaaatgaaatcaatgtatgatacggaagtaaaattt |
91 |
Q |
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| T |
38444083 |
tgtttatattttaaattaacacataacaaatgaaatcaatgcatgttatggaagtgaaattt |
38444144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 38186236 - 38186306
Alignment:
| Q |
20 |
ataaaatatttgtttgtatttgaaattaacagataacaaatgaaatcaatgtatgatacggaagtaaaatt |
90 |
Q |
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| T |
38186236 |
ataaaatatttgtgtatatctaaaattaacacataacaaatgataccaatgtatgttaaggaagtgaaatt |
38186306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 38212121 - 38212051
Alignment:
| Q |
20 |
ataaaatatttgtttgtatttgaaattaacagataacaaatgaaatcaatgtatgatacggaagtaaaatt |
90 |
Q |
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| T |
38212121 |
ataaaatatttgtgtatatctaaaattaacacataacaaatgataccaatgtatgttaaggaagtgaaatt |
38212051 |
T |
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