View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12419_low_42 (Length: 255)
Name: NF12419_low_42
Description: NF12419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12419_low_42 |
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| [»] scaffold0354 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 3519975 - 3519745
Alignment:
| Q |
1 |
tgcacatacttataatcatatttatggtctttccatgactggtttacgtttctttaccgtttatggtccttggggtcgtccggacatgtcttatttctta |
100 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||||||||||||||| || ||||||||||||||||||||||| || ||| || || |||| |
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| T |
3519975 |
tgcacatacttataatcatatttatggtctttccgtaactggtttacgtttcttcactgtttatggtccttggggtcgtcctgatatggctgtttactta |
3519876 |
T |
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| Q |
101 |
ttcactaaggatattttgaaggggaaacaaattactgtttttgaatcccctgatggtggaagtgttgttagagattttacgtatattgatgatatagtga |
200 |
Q |
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| T |
3519875 |
ttcactaaggatattttgaaaggaaaacaaattactgtgtttgaatctcctgatggtggaagtgtaactagagattttacgtatattggtgatattgtca |
3519776 |
T |
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| Q |
201 |
aagggtgtttaggggctttggatacagctaa |
231 |
Q |
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| T |
3519775 |
aagggtgtttaggggctttggatacagctaa |
3519745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 42373271 - 42373035
Alignment:
| Q |
1 |
tgcacatacttataatcatatttatggtctttccatgactggtttacgtttctttaccgtttatggtccttggggtcgtccggacatgtcttatttctta |
100 |
Q |
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||||||||||||||||||||| || || ||||| || || | || || || || || |||||||| |||||||| | || || ||| | |||||||| |
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| T |
42373271 |
tgcacatacttataatcatatctacgggctttcaatcaccgcgttgcgatttttcacggtttatgggccttggggaaggcctgatatggcgtatttcttc |
42373172 |
T |
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| Q |
101 |
ttcactaaggatattttgaaggggaaacaaattactgtttttgaatcccctgatggtggaagtgttgttagagattttacgtatattgatgatatagtga |
200 |
Q |
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| T |
42373171 |
ttcacaaaggatattttgaaggggaaacagataacagtgtttgaatcaccagatggtggatcagtggctagggattttacatacattgatgatgttgtta |
42373072 |
T |
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| Q |
201 |
aagggtgtttaggggctttggatacagctaaaaagag |
237 |
Q |
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| T |
42373071 |
agggttgtttaggggctctggatacggcaaaaaagag |
42373035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 126
Target Start/End: Complemental strand, 8315866 - 8315742
Alignment:
| Q |
2 |
gcacatacttataatcatatttatggtctttccatgactggtttacgtttctttaccgtttatggtccttggggtcgtccggacatgtcttatttcttat |
101 |
Q |
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|||||||||||||||||||| ||||||||||| | |||||||| | || || || |||||||||||||||||| | || || ||| |||| ||||| | |
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| T |
8315866 |
gcacatacttataatcatatctatggtctttctttaactggtttgaggtttttcactgtttatggtccttggggtaggcctgatatggcttacttctttt |
8315767 |
T |
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| Q |
102 |
tcactaaggatattttgaaggggaa |
126 |
Q |
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|||||| ||||||||||||||||| |
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| T |
8315766 |
tcactagagatattttgaaggggaa |
8315742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 8315695 - 8315643
Alignment:
| Q |
173 |
gattttacgtatattgatgatatagtgaaagggtgtttaggggctttggatac |
225 |
Q |
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| T |
8315695 |
gattttacttatattgatgatattgtgagggggtgtttaggtgctttggatac |
8315643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0354 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0354
Description:
Target: scaffold0354; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 10979 - 10911
Alignment:
| Q |
157 |
tggaagtgttgttagagattttacgtatattgatgatatagtgaaagggtgtttaggggctttggatac |
225 |
Q |
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| T |
10979 |
tggaactgttgctagggattttacttatattgatgatattgtgagggggtgtttaggagcattggatac |
10911 |
T |
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