View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12419_low_46 (Length: 246)
Name: NF12419_low_46
Description: NF12419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12419_low_46 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 18982592 - 18982825
Alignment:
| Q |
1 |
ccactcaagaaataggtgaaaactttcctcaacctagagttcttgagtacttgcatcaagttctaagaattgaaaagcaaaaattacttgattaagttct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18982592 |
ccactcaagaaataggtgaaaactttcctcaacctagagttcttgagtatttgcatcaagttctaagaattgaaaagcaaaaattacttgattaagttct |
18982691 |
T |
|
| Q |
101 |
aaaaagacgaagccatcttcttctgtttaatcaagtcttcgcaacaggtattcaacctgcacttcttttgtgagaggcattatccatttaccataaagat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18982692 |
aaaaagacgaagccatcttcttctgtttaatcaagtcttcgcaacaggtattcaacctgcacttcttttgtgagaggcattatccatttaccataaagat |
18982791 |
T |
|
| Q |
201 |
tgccaatcaaacctgacttgattctatacacagg |
234 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
|
|
| T |
18982792 |
tgccaatcaaacctgacttgattctatatacagg |
18982825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University