View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12419_low_48 (Length: 235)
Name: NF12419_low_48
Description: NF12419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12419_low_48 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 44641357 - 44641554
Alignment:
| Q |
18 |
aaaaggtacattgggggttacgaaaatcaacaagggcaaaccataatgcaatcattgtcactaacagtataaattgcaattagaaatggacaccaacata |
117 |
Q |
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| T |
44641357 |
aaaaggtacattgggggttacgaaaatcaacaagggcaaaccataatgcaatcattgtcactaacagtataaattgcaattagaaatggacaccaacata |
44641456 |
T |
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| Q |
118 |
tattttcgaaaatacagaaaaagattaaagatacacacaccttcagcaccaatgtatacatagctcaataacctttacaaaacaatctcgtgccgtctct |
217 |
Q |
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| T |
44641457 |
tattttcgaaaatacagaaaaagattaaagat----acaccttcagcaccaatgtatacatagctcaataacctttacaaaacaatctcgtgccgcctct |
44641552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 31 - 202
Target Start/End: Original strand, 44666840 - 44667006
Alignment:
| Q |
31 |
ggggttacgaaaatcaacaagggcaaaccataatgcaatcattgtcactaacagtataaattgcaattagaaatggacaccaacatatattttcgaaaat |
130 |
Q |
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| T |
44666840 |
ggggttacaaaaatcaataagggcaaaccataatgcaatcattgtcattaatagtataaattgcaattagaaatggacaccaacatatattttcaaaaat |
44666939 |
T |
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| Q |
131 |
acagaaaaagattaaagatacacacaccttcagcaccaatgtatacatagctcaat-aacctttacaaaacaa |
202 |
Q |
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| T |
44666940 |
aaag--aaagattaaagat----acaccttcagcaccacggtatacacagctcaataaacttttacaaaacaa |
44667006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 31 - 202
Target Start/End: Original strand, 44686164 - 44686330
Alignment:
| Q |
31 |
ggggttacgaaaatcaacaagggcaaaccataatgcaatcattgtcactaacagtataaattgcaattagaaatggacaccaacatatattttcgaaaat |
130 |
Q |
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| T |
44686164 |
ggggttacaaaaatcaataagggcaaaccataatgcaatcattgtcattaatagtataaattgcaattagaaatggacaccaacatatattttcaaaaat |
44686263 |
T |
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| Q |
131 |
acagaaaaagattaaagatacacacaccttcagcaccaatgtatacatagctcaat-aacctttacaaaacaa |
202 |
Q |
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| T |
44686264 |
aaag--aaagattaaagat----acaccttcagcaccacggtatacacagctcaataaacttttacaaaacaa |
44686330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 68 - 202
Target Start/End: Original strand, 45568615 - 45568745
Alignment:
| Q |
68 |
atcattgtcactaacagtataaattgcaattagaaatggacaccaacatatattttcgaaaatacagaaaaagattaaagatacacacaccttcagcacc |
167 |
Q |
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| T |
45568615 |
atcattgttattaatagcataaattgcaattagaaatgaacatcaacatctattttaaaaaatacagaaaaagattaaagatacaca----tgcagcacc |
45568710 |
T |
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| Q |
168 |
aatgtatacatagctcaataacctttacaaaacaa |
202 |
Q |
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| T |
45568711 |
ggtgtatacatagctcaataacttttacaaaacaa |
45568745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 66 - 202
Target Start/End: Original strand, 45093922 - 45094054
Alignment:
| Q |
66 |
caatcattgtcactaacagtataaattgcaattagaaatggacaccaacatatattttcgaaaatacagaaaaagattaaagatacacacaccttcagca |
165 |
Q |
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| T |
45093922 |
caatcattgttattaatagcataaattgcaattagaaatgaagaccaacatctattttcaaaaatacagaaaaagattaaagataccca----tgcaaaa |
45094017 |
T |
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| Q |
166 |
ccaatgtatacatagctcaataacctttacaaaacaa |
202 |
Q |
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| T |
45094018 |
ccagtgtatacatagctcaatgactttttcaaaacaa |
45094054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 101 - 202
Target Start/End: Original strand, 45103093 - 45103200
Alignment:
| Q |
101 |
aaatggacaccaacatatattttcgaaaatacagaaaaagattaaa---gataca-cacaccttcagcaccaatgtata--catagctcaataaccttta |
194 |
Q |
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||||||||| ||||| | ||||| |||||||| |||||||||||| ||||| ||||| | ||||||||||||||| |||||||||||||||||| |
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| T |
45103093 |
aaatggacatcaacacagattttaaaaaatacataaaaagattaaacatgatactgcacacatgcagcaccaatgtatatacatagctcaataacctttg |
45103192 |
T |
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| Q |
195 |
caaaacaa |
202 |
Q |
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|||||||| |
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| T |
45103193 |
caaaacaa |
45103200 |
T |
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